Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1196 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 545/1163 (46%), Positives = 746/1163 (64%), Gaps = 66/1163 (5%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPP--------------LVKKVAAMGMPAMALTDFTN 46
            MS  +F+HL +H++FS+ D   +VP               L+ +   + +PA+A+TD  N
Sbjct: 1    MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNN 60

Query: 47   LCGLVKFYSTAHNCGVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYL 106
            L  LVKFY  A   G+KPI GAD  + + +      ++TLL ++  GY +L+ L+++A++
Sbjct: 61   LFALVKFYKAAEGVGIKPIAGADVMIATPDVTP--WRMTLLCRDREGYLSLSRLLTRAWM 118

Query: 107  RGHVQHQPV-IDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADH 165
             GH     V I   WL      L  L+G +    GR   +G     E+ +  +Q  F D 
Sbjct: 119  EGHRPEGGVAIHPEWLQAGHANLFALAG-RDSLAGRLFAEGRADLAEQQLADWQRVFGDG 177

Query: 166  FYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTL 225
             +LEL RTGR  EE +  FAL  A    LPVVA+N+V F+    F AHE RV I  G  L
Sbjct: 178  LHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEARVCISSGRVL 237

Query: 226  EDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG- 284
            +DP+RP++YS +QYL+S  EM  LFAD+P+A+ N++ +A+RCN+ +RLG YFLP +P   
Sbjct: 238  DDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGTYFLPAYPVPE 297

Query: 285  GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIV 344
               ++ ++  +SR+GL  RLE    +P    K R +Y +RL+ ELD I +MGFPGYFLIV
Sbjct: 298  DETLDSWIRSQSRDGLAARLE---KNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIV 354

Query: 345  MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404
             +FIQW K+  IP+GPGRGSGAGSLVA+AL+ITDLDPL Y+LLFERFLNPERVSMPDFD+
Sbjct: 355  ADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDI 414

Query: 405  DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP 464
            DFCMD+RD+VID+VA  YGR+ VSQIIT+GTMAAKAV+RD GRVLG  +G VD ++KL+P
Sbjct: 415  DFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTYGLVDSVAKLIP 474

Query: 465  PDPGMTLEKAF-------IAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVI 517
               G+TL+ A        +A P L + Y  +++V++L+D  R LE  TRNAGKHAGGVVI
Sbjct: 475  NILGITLKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVI 534

Query: 518  SPTAITDFAPIYCDAE----GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVN 573
            +P  +++F P++ + +    G  PVTQFDKNDVE  GLVKFDFLGLRTLTIIDWA+  +N
Sbjct: 535  APEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAIN 594

Query: 574  PRLKKAGKPPVRIEAIPLDDARSFRNL-QDAKTTAVFQLESRGMKELIKRLQPDCFEDII 632
             R  +AG  PV I AIPLDDA +++ +     T AVFQ ES GM+ L+K  +PD FED+I
Sbjct: 595  VRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLI 654

Query: 633  ALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQ 692
            ALV+L+RPGP+   ++ +F  RKHG++ I YPD + +      IL+ TYGI++YQEQVMQ
Sbjct: 655  ALVSLYRPGPMD--LIPDFNARKHGQQDIIYPDPRTE-----AILKDTYGIMVYQEQVMQ 707

Query: 693  IAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFA 752
            +AQ++  Y+LGGAD+LRRAMGKK P EMAK R +F+EGA K GV  + A +IFDL+EKFA
Sbjct: 708  MAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLMEKFA 767

Query: 753  GYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVL 812
            GYGFNKSH+AAYALVSYQT WLK HYPAEFMAA +++DMDNT+KVVG +DE +N+GLTVL
Sbjct: 768  GYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVL 827

Query: 813  PPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLK 872
            PP +N   Y F       I YG+GAIKGVG+G  EAI+E R + G +  L DFC R+   
Sbjct: 828  PPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTRVGTA 887

Query: 873  KVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE 932
            K+N+R +E +I AGA+D LG +RA++M  + + ++A  Q  +  A GQ  +FG    +  
Sbjct: 888  KLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAP 947

Query: 933  EVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLN---------- 982
             +     +  EWP    L GERETLG YL+GHP D +  E+ +   C L+          
Sbjct: 948  AMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKILASQQ 1007

Query: 983  ---------EAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEA 1033
                     E    R + S  +AG V+  R    ++G     + L+D  GR+E   +S+A
Sbjct: 1008 RGGGGGGDGEKRAWRPEVSAILAGQVVGVR----RKGDSQVFVQLEDGRGRVECSAFSDA 1063

Query: 1034 LDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFARGLSISILQSQID 1093
            +  +   L +D+IL++ G +  D+FNGG  +  R+  D         + LS+ +     +
Sbjct: 1064 MAEFGHLLTRDRILIIKGGLREDEFNGGYSLRIRQCWDYEQICADHTQRLSLRL--DLRE 1121

Query: 1094 QQFFERFSHILEPHRAGTVPVNV 1116
            +Q + R   +L  HR G  P+ +
Sbjct: 1122 KQAWSRIDTLLAKHRPGKTPLRL 1144