Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1031 a.a., DNA polymerase III, alpha subunit from Pseudomonas syringae pv. syringae B728a

 Score =  349 bits (895), Expect = e-100
 Identities = 308/1090 (28%), Positives = 513/1090 (47%), Gaps = 99/1090 (9%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  + + G+  
Sbjct: 4    EYAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKSTGLPL 63

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            I+G++  +++        K+ LL +N  GY+ L  LI+ A  R       V+ + +  E 
Sbjct: 64   IVGSEMHIENGP------KVVLLVENQAGYEALCKLITVARRRAGKGEYRVLREDF--EP 115

Query: 125  A-EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLH 183
            A +GL+ L         +A L G +   ER        FA+  +L +      D+E  L 
Sbjct: 116  APDGLLALWLPDLDGNAQACLAGGRWLRER--------FAERLWLGVGLHRGPDDEQRLA 167

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
              L +A+   +P VA+ +V           +   AI    T+ +       + +++LR  
Sbjct: 168  DLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPL 227

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREGLEE 302
              + E + D    LA SV IA+RC   +   +Y  P+     G     +L   +  G+  
Sbjct: 228  DALSEHYPDW--LLAESVRIARRCTFDLGDLKYEYPHELVPKGQTSTSWLRELTERGVRR 285

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            R    +P     A R      +++ EL +I +  F  YFL V + +++++   I +  GR
Sbjct: 286  R----WPGGLTPATRA-----QVEKELALIAEKKFDSYFLTVHDIVEFARSQHI-LCQGR 335

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S V YAL IT+L+P + +LLFERF++ ER   PD DVDF  D+R++VI ++   Y
Sbjct: 336  GSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRY 395

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFI----AE 478
            GR   +      T      +RDV +VLG            +PP+    L +AF     + 
Sbjct: 396  GRGRAALTAVASTYHGSGAMRDVAKVLG------------LPPEQINALAEAFSRWSDSL 443

Query: 479  PALQEL----YDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAE 533
            P+ + L    +DAD  + K ++     L G  R+  +H GG VIS   +    P+   A 
Sbjct: 444  PSPERLREYGFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAM 503

Query: 534  GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDD 593
             +  + Q+DK+D++  GL+K D L L  L+ +     LV+  L +  +    +  +P DD
Sbjct: 504  ADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVH--LHRGQR--WTLATLPGDD 559

Query: 594  ARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653
             +++  +  A T  VFQ+ESR    ++ RL+P+ F D++  VA+ RPGP+Q  MV  ++ 
Sbjct: 560  RKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLR 619

Query: 654  RKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
            R++G E ++YP +      L+ + + T G+ L+QEQVM++A + + YT G AD LRRAM 
Sbjct: 620  RRNGEEDVTYPPK------LESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMA 673

Query: 714  K-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772
              K+   +   R   + G  KNG + + A +IF+ ++ F  YGF +SH+A++AL++Y + 
Sbjct: 674  AWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASC 733

Query: 773  WLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD----- 827
            WLK H PA F  A++ +          L+ + +   + + P D+    +  +++      
Sbjct: 734  WLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPD 793

Query: 828  ---NGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884
               N AI  G+  ++   E     I  AR K   F D  D   R +L   + R  E L  
Sbjct: 794  RTRNLAIRLGLRMVRSFREEDALRIEVARAKRP-FVDATDLTLRAEL---DARAAEALAD 849

Query: 885  AGALDRLGPHRAAMMASVDDAVRAASQHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVP 942
            +GAL  L  HR                 H+A  E  G      +  D P E  Q    +P
Sbjct: 850  SGALRGLIGHR-----------------HRARWEVAGVEAQRPLFDDLPSEETQVTLPLP 892

Query: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002
               E   L  +  TLG  L  HP+    ++L         +      D++L+VAGLVI  
Sbjct: 893  TVAED--LVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGR 950

Query: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGL 1062
            +   T  G  +  +TL+D  G + V+++ +  +R  + L   ++L V G++  +  +G  
Sbjct: 951  QRPGTASG--VTFVTLEDEFGMVNVVVWRDLAERQRKVLVGSQLLQVFGRL--ESKSGVR 1006

Query: 1063 KMSAREVMDL 1072
             + A+ + DL
Sbjct: 1007 HLIAQRLYDL 1016