Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1173 a.a., DNA polymerase III, alpha subunit from Pseudomonas syringae pv. syringae B728a

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 661/1172 (56%), Positives = 848/1172 (72%), Gaps = 23/1172 (1%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H+++S+VDGL +V PL+K +  M MPA+A+TD  N+C LVKFY  A   G+KPI
Sbjct: 5    FVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSGIKPI 64

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
             G D  L   +    L++++LLA N  GY+NLT LIS+ ++ G    Q VI + W+ + +
Sbjct: 65   CGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWVAQAS 124

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
            EG+I LS  K GE+G ALL GN  + +  +  +   F D FY+E+ RT RA++E +LH A
Sbjct: 125  EGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRANDEEHLHAA 184

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
            + +AE++  P+VATN+V FI +  FEAHE RV I +G  L+DPRR  NYS +QYL+S  E
Sbjct: 185  VALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDPRRSHNYSDQQYLKSPEE 244

Query: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEERL 304
            M ELF+D+PEAL N+VEIAKRCN+ V+LG +FLPNFP   GM I+++    S +GLEERL
Sbjct: 245  MAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGLEERL 304

Query: 305  EFLFPDP--EVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
              L P    E    +R  Y +RL  ELD+I QMGFPGYFLIVM+FIQW+K N +PVGPGR
Sbjct: 305  AVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGR 364

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GSGAGSLVAY  KITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMD RD+VI++VAE Y
Sbjct: 365  GSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKY 424

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR+AVSQIITFG+MAAKAV+RDV RV G  +G  DR+SK++P + GMTLEKA+  E  L+
Sbjct: 425  GRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484

Query: 483  ELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFD 542
            +    DEE  E+ +    LEG  RN GKHAGGVVI+PT +TDF+PIYCD  G+  VTQFD
Sbjct: 485  DFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFD 544

Query: 543  KNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQD 602
            K+DVE AGLVKFDFLGLRTLTIIDWAL  +N    K  + P+ I  IPLDD  +++ LQ 
Sbjct: 545  KDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQR 604

Query: 603  AKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662
            A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR  +S
Sbjct: 605  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELS 664

Query: 663  YPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722
            YP   +Q+E LK +L PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 665  YPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 724

Query: 723  QRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 782
            QR  F +G + N +D +LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLKTHYPA F
Sbjct: 725  QRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPF 784

Query: 783  MAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVG 842
            MAAV++ADM NT+KVV L++E + M L +  PD+N+  ++F V D+G I+YG+GAIKGVG
Sbjct: 785  MAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVG 844

Query: 843  EGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-------- 894
            EGP+EAI +AR + G FKDLFDFCAR+DLK+VNKR ++ LI +GALDRLGP+        
Sbjct: 845  EGPVEAITDAR-QNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAY 903

Query: 895  -------RAAMMASVDDAVRAASQHHQAEAFGQADMF-GVLTDAPEEVEQKYTQVPEWPE 946
                   R+ ++A++++A++AA Q  ++   G +D+F G+  +A  +V   + +  E   
Sbjct: 904  QANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYANHRKTRELSL 963

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006
            K RL GE+ETLGLYLTGHP+DEY  E+ ++   R+ +  P R  Q  TVAGL+IA RVM 
Sbjct: 964  KDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVMK 1021

Query: 1007 TKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSA 1066
             K+G ++G +TLDDRS R+E  L++EA       L+ D ++VV G+VS DDF+GGL++ A
Sbjct: 1022 NKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLRA 1081

Query: 1067 REVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARAR 1126
            + VM +  AR   A  L +++    +          + + HR G  P+ V Y   DARA 
Sbjct: 1082 KRVMSIEDARTNLAESLRVTVRAEALKGDRLRWLGDLCKRHR-GACPITVDYTGQDARAL 1140

Query: 1127 LTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
            L LG  WR+ P+D+L+  L+   G + V L++
Sbjct: 1141 LQLGEAWRIDPADSLIQALRDQFGRENVFLQY 1172