Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 897 a.a., trans-splicing intein-formed DNA polymerase III subunit alpha N-terminal partner DnaE-N from Synechocystis sp000284455 PCC 6803

 Score =  541 bits (1393), Expect = e-157
 Identities = 319/790 (40%), Positives = 478/790 (60%), Gaps = 59/790 (7%)

Query: 6   FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
           F+ L IHSD+S++DG S++P L+ +   +GMPA+ALTD   + G V+         +KPI
Sbjct: 3   FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKPI 62

Query: 66  IGADFTLQSEEFGDELTKL------TLLAKNNVGYKNLTLLISKAYLRG----HVQHQPV 115
           IG +  + + +   E+ K        +LAKNN GY+NL  L + + L+G     +  +P 
Sbjct: 63  IGNEMYVINGDI--EINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARPC 120

Query: 116 IDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR 175
           I+K  L ++ EGLIV S    GEV +A+LKG+     +  ++Y+  F D +YLE+   G 
Sbjct: 121 INKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHGS 180

Query: 176 ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 235
            ++       + +A++ D+ +VATN+  FI+    EAH+  + I  G  + + +R + YS
Sbjct: 181 VEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-YS 239

Query: 236 PKQYLRSEAEMCELFAD------IPEALANSVEIAKRCNVTVRLGEYFLPNFP-----TG 284
             +YL+S  EM  LF D      I  A+AN++E+A +      LGE  +P++P     T 
Sbjct: 240 GTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHTP 299

Query: 285 GMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIV 344
              +ED     + +GL ERL+        RA   P Y ERL+ EL ++ +MGF  YFL+V
Sbjct: 300 ETYVEDI----AWDGLLERLKC-----RERADITPVYKERLEYELRMLEKMGFCTYFLVV 350

Query: 345 MEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDV 404
            ++I++++D+ IPVGPGRGS AGSLVAY +KIT++DP+ + L+FERFLNPER SMPD D 
Sbjct: 351 WDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDT 410

Query: 405 DFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP 464
           DFC+D+RD++I++V + YG D V+QIITF  M +KAV++DV RVL  P+   D+++K++P
Sbjct: 411 DFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIP 470

Query: 465 PDPGMTLE-KAFIA----EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISP 519
              G   + K  I+    EP  +  YD +  VK+ ID    +EG  +  G HA GVVIS 
Sbjct: 471 VSRGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISS 530

Query: 520 TAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPR---- 575
             +    P+  + +G   +TQ+   DVE  GL+K DFLGL+ LT +  A+ LV       
Sbjct: 531 EPLDQIVPLQKNNDGAV-ITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIE 589

Query: 576 -----LKKAGKPPVRIEA------IPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQ 624
                L    +  ++I A      +P D  ++ + L+      +FQLES+GMK++++ L+
Sbjct: 590 LDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLK 649

Query: 625 PDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGII 684
           P   EDI +++AL+RPGPL +G++  FI+RKHGRE ISY     QH+ L+ IL  TYG++
Sbjct: 650 PSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISY-----QHKLLEPILNETYGVL 704

Query: 685 LYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKI 744
           +YQEQ+M++AQ L+ Y+LG AD+LRRAMGKKK EEM K RA F +G+ K+GV   +A  +
Sbjct: 705 VYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENL 764

Query: 745 FDLVEKFAGY 754
           FD + KFA Y
Sbjct: 765 FDQMVKFAEY 774