Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C from Synechocystis sp000284455 PCC 6803

 Score =  177 bits (449), Expect = 2e-48
 Identities = 109/316 (34%), Positives = 173/316 (54%), Gaps = 15/316 (4%)

Query: 756  FNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPD 815
            FNKSHS AYA V+YQT +LK +YP E+MAA++TA  D+ EKV    + C+ MG+TV PPD
Sbjct: 38   FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 97

Query: 816  INSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKG--GYFKDLFDFCARIDLKK 873
            IN     F      AI++G+ A++ +GEG IE I+ AR+      FK L DFC ++DL+ 
Sbjct: 98   INRSQRHF-TPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRV 156

Query: 874  VNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLT----- 928
            VN+R IE LI+AGA D +  +R  ++  ++  +  A +  + +  GQ ++F  LT     
Sbjct: 157  VNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTAGESI 216

Query: 929  DAPEEVEQKYTQVPEWPE------KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLN 982
             A E     + Q P  P       + +L+ E+E LG Y++ HP+    +     +   L 
Sbjct: 217  KAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLSPINLV 276

Query: 983  EAAPTR-RDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWL 1041
            +    + R +   VA LV   +++T K G  +  +TL+D SG+ E +++    +R  + L
Sbjct: 277  DLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFPSNYERLQDVL 336

Query: 1042 EKDKILVVSGQVSFDD 1057
             +    ++ G+V   D
Sbjct: 337  IEGSQQMIWGKVDRRD 352