Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., DNA polymerase III subunit alpha from Synechococcus elongatus PCC 7942

 Score =  564 bits (1454), Expect = e-165
 Identities = 322/772 (41%), Positives = 478/772 (61%), Gaps = 40/772 (5%)

Query: 6   FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG-VKP 64
           F+ L +HSD+S++DG S++P LV +   +GMPA+ALTD   + G ++      N G ++P
Sbjct: 3   FVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIRP 62

Query: 65  IIGADFTLQSEEFGDELTKLT-----LLAKNNVGYKNLTLLISKAYLRGH----VQHQPV 115
           IIG +  + +    D   ++      +LAKN  GY+NL  L S ++L+G     +  +P 
Sbjct: 63  IIGNEMYVINSPIDDPNPRVRKYHQIVLAKNKKGYQNLVKLTSISHLQGFKGRGIFARPC 122

Query: 116 IDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR 175
           IDK  L ++ EGLIV S    GE+ +A+L+       R   +YQ  F + FYLE+   G 
Sbjct: 123 IDKEHLEKYREGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYLEIQDHGS 182

Query: 176 ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 235
            ++       + +A++  + +VATN+  FI+    EAH+  + I  G  + + +R + YS
Sbjct: 183 PEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVEDKRLR-YS 241

Query: 236 PKQYLRSEAEMCELFAD------IPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAI 288
             +YL+S  EM +LF D      I +A+AN++ IA +      LGE  +P FP   G   
Sbjct: 242 GTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPVPDGYNE 301

Query: 289 EDFLVMKSREGLEERLEF-LFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEF 347
           E ++   +R+GL ERL    + D E        Y +RL+ E+ ++++MGF  YFL+V ++
Sbjct: 302 ETYMAEVARQGLAERLNCDRYEDCE------EAYRDRLEYEIKMMHEMGFASYFLVVWDY 355

Query: 348 IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407
           I++++DN+IPVGPGRGS AGSLVAY + IT++DP+ + LLFERFLNPER SMPD D DFC
Sbjct: 356 IKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFC 415

Query: 408 MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467
           +D+RD+VID+V + YG D V+QIITF  M +KAV++DV RVL  P+G  DR++KL+P   
Sbjct: 416 IDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPVAR 475

Query: 468 GMTLE-KAFIAE----PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522
           G   + K  I++    P  +E Y+ D  VK  +D    +EG  +  G HA GVVIS   +
Sbjct: 476 GKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAVPL 535

Query: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582
            +  P+  + +G   +TQ+   D+E  GL+K DFLGLR LT+I  A+ LV     +A  P
Sbjct: 536 DEIVPLQRNNDGQV-ITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAIDP 594

Query: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642
               + +P+DD ++++ L       VFQLES GM+++++ L+P   EDI +++AL+RPGP
Sbjct: 595 ----DRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPGP 650

Query: 643 LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702
           L +G++  FI+RKHGREAI Y D     + L+ IL  TYGI++YQEQ+M+IAQ + GYTL
Sbjct: 651 LDAGLIPKFINRKHGREAIDYAD-----QMLQPILNETYGIMVYQEQIMKIAQDMGGYTL 705

Query: 703 GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGY 754
           G AD+LRRAMGKKK  EM K ++ F EGA+KNGV  ++A ++FD +  FA Y
Sbjct: 706 GEADLLRRAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEY 757