Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1116 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  315 bits (806), Expect = 2e-89
 Identities = 271/1081 (25%), Positives = 491/1081 (45%), Gaps = 81/1081 (7%)

Query: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61
            +D  F  L   ++FS ++G +    +V      G+  + + D  ++ G+V+ ++ A   G
Sbjct: 3    ADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKVEG 62

Query: 62   VKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWL 121
                 GA        F D    +    KN  G+ +L  L+S   LR   +    +  A L
Sbjct: 63   YPFQPGARLV-----FADGTPDILAYPKNRRGWGHLCRLLSAGNLRSK-KGDCTLHLADL 116

Query: 122  VEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181
            +E  E L+++     G       +   + +E  +   + H  +  YL L       +   
Sbjct: 117  LEWQEELLLIVMQGEG-------RPEPESLEVLLGTLKEHAGNRLYLGLAPHYDGFDRHD 169

Query: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241
                  +A +  + ++ATN+ ++         ++  +I +   +         + +++L+
Sbjct: 170  FAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIAGAGFLLQKNAERHLK 229

Query: 242  SEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGLE 301
               EM  LF+D PEA+AN+ +  +    ++    +  P+    G    + L     EG  
Sbjct: 230  GPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQYPDENADGETPAESLRRLVAEGAA 289

Query: 302  ERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG 361
            ER     P+  +R         ++  EL++I+   +  YFL V + +++++  +I +  G
Sbjct: 290  ERYPEGVPEKVMR---------QIDYELELIHDKKYEPYFLTVHKLVKFARSVNI-LCQG 339

Query: 362  RGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEM 421
            RGS A S V + L ITD+DP ++ LLF+RFL+ +R   PD DVDF  ++R++VI ++   
Sbjct: 340  RGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDVDFEHERREEVIQYIYRT 399

Query: 422  YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPAL 481
            YG++     +T   ++ ++  R  GR +   FG  + +   +           F  E A 
Sbjct: 400  YGKEHAG--LTAAVISYRS--RSAGREVAKAFGLSEDVQSALVSSIWGWGTSPFTEEQAK 455

Query: 482  QELYD-ADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
                D AD   + ++    +L    R+  +H GG VI+   + +  PI   A  +  + +
Sbjct: 456  GAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLDEVVPIMNTAMPDRYMIE 515

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            +DK+D++   ++K D L L  LT +     L+       G+P    E         +  +
Sbjct: 516  WDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHY---GEPITLAEIYQDHRDAVYDMI 572

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR-- 658
              A T  VFQ+ESR    ++ RLQP    D++  VA+ RPGP+Q  MV  ++ R+  +  
Sbjct: 573  CRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGNMVHPYLKRREAQRR 632

Query: 659  -EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KK 716
             EA+ YP  +     LK +LE T G+ L+QEQ MQIA   +G++   AD LRRAM   K+
Sbjct: 633  GEAVVYPSPE-----LKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRLRRAMATFKR 687

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
               +        EG   N  + E A + F+ ++ F  YGF +SH+A++A + Y + WLKT
Sbjct: 688  TGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASLVYASAWLKT 747

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNG------- 829
            +YP  F AA++ A          LV + +  G+ +LP DIN   +   ++  G       
Sbjct: 748  YYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEGEGAFDKNAV 807

Query: 830  ---------------AIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKV 874
                           A+  G   +KG+ +  ++A++  R +G  ++ + D   R  L   
Sbjct: 808  HPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG--YRSVHDLWLRSGL--- 862

Query: 875  NKRVIEKLILAGALDRLGPHRAAMMASVD--DAVRAASQHHQAEAFGQADMFGVLTDAPE 932
            ++ V+E+L  A A   +G  R A + +V   D   A  +    E  G  D+         
Sbjct: 863  SRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVERLPLFEGAGSDDL--------- 913

Query: 933  EVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQS 992
            ++E K   +P+ P   ++  +  TL L L  HPV    ++ ++    R  + A T   + 
Sbjct: 914  QIEPK-VALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRDLAATATGRW 972

Query: 993  LTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
            +TVAGLV+  +   +  G  +  MT++D +G   ++++ +   +Y   +   +++ V G+
Sbjct: 973  VTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVWEKTFQKYRRQVMGSRLVKVRGR 1030

Query: 1053 V 1053
            +
Sbjct: 1031 L 1031