Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  804 bits (2077), Expect = 0.0
 Identities = 469/1113 (42%), Positives = 664/1113 (59%), Gaps = 53/1113 (4%)

Query: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61
            +DP+F+HLR+HS +S+++G   +  ++ K  A   PA+ + D  NL   ++F   A + G
Sbjct: 19   ADPQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDG 78

Query: 62   VKPIIGADFTLQSEEFGD-----------ELTKLTLLAKNNVGYKNLTLLISKAYLRGHV 110
            ++PIIG   ++  E+  +           +L  + L+A    GY  L  L+S+AYL G  
Sbjct: 79   LQPIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEG 138

Query: 111  QHQPVIDKAWLVEHAE-GLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLE 169
              Q  I ++WL      GLI L+G  +G V  AL  G+    E  ++     F D  Y+E
Sbjct: 139  HQQTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVE 198

Query: 170  LIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPR 229
            L R G  D   + +  +D+A + D+P+VATNE  F +   ++AH+  +A+     + D  
Sbjct: 199  LQRHGNYDRR-HENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDS 257

Query: 230  RPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIE 289
            R +  +P  YL+S  EM  LFAD+PEAL N++E+A+RC+  ++     LP F       E
Sbjct: 258  RFR-LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPE 316

Query: 290  DF-------LVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFL 342
            +        L  ++ EGLEERL  L   P  + +   +Y ERL  EL VI +M FPGYFL
Sbjct: 317  EAERAEVAELRRQAEEGLEERLAKLGMAPGYKEE---DYRERLAFELGVIQRMKFPGYFL 373

Query: 343  IVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDF 402
            IV +FI+W+K +DIPVGPGRGSGAGSLVAYAL ITD+DP+ + LLFERFLNPERVSMPDF
Sbjct: 374  IVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDF 433

Query: 403  DVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKL 462
            D+DFC D+R++VI +V + YGR+ V+QIITFG++ A+A +RDVGRVL  P+G VD+I KL
Sbjct: 434  DIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 493

Query: 463  VPPDPG--MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPT 520
            VP +P     L KA   EP L+E  + +  V  L+D  + +EG  R+A  HA G+VI   
Sbjct: 494  VPNNPANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDR 553

Query: 521  AITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAG 580
             ++   P+Y D   + PVTQF+   VE AGLVKFDFLGL+TLT++  A+  V       G
Sbjct: 554  PLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFV-------G 606

Query: 581  KPPVRIE--AIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALF 638
            K  + I+  +IPLDD +++  L   +T  VFQ+ES GM++ +  ++PDC EDIIALVAL+
Sbjct: 607  KRGIHIDLASIPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALY 666

Query: 639  RPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLS 698
            RPGP+++  V N   RKHG E I     +  H  +  +L+ T G+I+YQEQVMQIAQVLS
Sbjct: 667  RPGPMENIPVYN--ARKHGEEEI-----ESIHPKIDYLLKETQGVIVYQEQVMQIAQVLS 719

Query: 699  GYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNK 758
            GY+LG AD+LRRAMGKK   EM KQRA F +GA KNGV    A  IFDL+ KFA YGFNK
Sbjct: 720  GYSLGEADLLRRAMGKKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNK 779

Query: 759  SHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINS 818
            SH+AAYA+VSYQT ++K HYP EF+AA MT DM NT+K+     +   +G+ V+ P + +
Sbjct: 780  SHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQT 839

Query: 819  GLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRV 878
                F   DN  I Y + A+KGVGE  ++ I+  R     F  L DFC RID K +N+RV
Sbjct: 840  SHRHFETGDN-RIYYSLAALKGVGESAVDHIVAVRGDRP-FASLEDFCLRIDPKLLNRRV 897

Query: 879  IEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGV-LTDAPEEVE-Q 936
             E LI AGA D  G  RA ++  +D  +  A +  + +  GQ+DMFG      PE++   
Sbjct: 898  FESLIAAGAFDCFGYDRAELIGGLDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALP 957

Query: 937  KYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNE--AAPTRRDQSLT 994
             YT    W    +L  E + LG YL+ HP+D Y   L K       +  AA  +   +  
Sbjct: 958  PYT---PWLASEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGR 1014

Query: 995  VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVS 1054
            +AG V + +   T+ G ++G++   D SG+ E +L+SE L++Y + LE  K LV++  V 
Sbjct: 1015 LAGTVTSKQERKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVMT--VD 1072

Query: 1055 FDDFNGGLKMSAREVMDLGSAREKFARGLSISI 1087
             ++   G+ +  R +  L     +  + L + +
Sbjct: 1073 AEERPEGIGLRIRTLRSLEEESLQMQKALRVYV 1105