Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  325 bits (832), Expect = 2e-92
 Identities = 278/1062 (26%), Positives = 483/1062 (45%), Gaps = 71/1062 (6%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L   S++S + G S    LV + A +G  A+A+TD  ++ G+VK +  A + G+  I
Sbjct: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            +G++F LQ   F        LLA +  GY  L  LIS+   R       +     L    
Sbjct: 62   VGSEFRLQQGTF-------VLLATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLP 114

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQ--QVERCIEFYQTHFADHFYLELIRTGRADEESYLH 183
            + +++         G  +    Q     ++ +    T +    YL   +   A    +  
Sbjct: 115  DCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQR 174

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
            + + ++   D+P VA  +V   +       ++   I  G  L++       + + YLR  
Sbjct: 175  YLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRPL 234

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLP-NFPTGGMAIEDFLVMKSREGLEE 302
              +   +    E +AN+ +IA +C  ++    Y  P      G +  ++L  +  +G   
Sbjct: 235  GSIHRRYPQ--EWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAKGARR 292

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            R     P    R         +   EL +I+++ +  +FL + + +++++   I +  GR
Sbjct: 293  RYGLAVPAAVKR---------QYLAELKLIHELEYEYFFLTIYDIVRFARRKRI-LHQGR 342

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S+V + L IT++DP   ++LFERF++ ER   PD DVDF  ++R++VI ++   Y
Sbjct: 343  GSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYRKY 402

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDR-ISKLVPPDPGMTLEKAFIAEPAL 481
            GR   +   +  T   K+ + +VG+VLG     V R I  +   DP     +   A+   
Sbjct: 403  GRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQGIDRRDPSHPWREQLAAQLPS 462

Query: 482  QELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQF 541
             +++             + L G  R+  +H GG VIS   + +  P+   A  +  V Q+
Sbjct: 463  ADMFGY---------LVQSLLGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVIQW 513

Query: 542  DKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQ 601
            DK+D+E  GL+K D L L  LT I     L++       + P  + +I  +D   +R L 
Sbjct: 514  DKDDLEALGLLKVDVLALGMLTAIRKCFELISRH-----QQPFGMRSIKAEDPNVYRMLS 568

Query: 602  DAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 661
               +  VFQ+ESR    ++ RL+P C+ D++  +A+ RPGP+Q  MV  F+ R+ G EA+
Sbjct: 569  RGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLEAV 628

Query: 662  SYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEM 720
            +YP      E++K +LE T G+ ++QEQV+++A V +G++ G AD LRRAM   K   ++
Sbjct: 629  TYPS-----EAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMASWKHTGKL 683

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
                    +G    G   + A +IF  ++ F  YGF +SHSA++AL++Y + +LK ++PA
Sbjct: 684  WSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAYLKLYHPA 743

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNG---AIVYGIGA 837
             F  A++ +          L+ + +  G+ V    IN   +  ++       AI  G   
Sbjct: 744  AFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGFAIRLGFRQ 803

Query: 838  IKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAA 897
            +KG+ E  ++ +++ R+  G F  L +    +D     +  +E L  A A   L  HR  
Sbjct: 804  VKGLKEQAMQRLVDVRSAAG-FAHLSEISMLLD-----RHALELLAAADAFRLLSGHR-- 855

Query: 898  MMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP-EWPEKVR-LEGERE 955
              +    + R AS               +  D PE ++   T+   + P  V+ L+ +  
Sbjct: 856  FQSRWQLSARQAS-------------LPLFDDLPEPLKPVGTEPSLDAPNAVQCLKADYR 902

Query: 956  TLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGL 1015
            + GL L  HP+           S        TR  Q +TVAG+V   +   T  G  +  
Sbjct: 903  SKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVTGRQRPGTASG--VTF 960

Query: 1016 MTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDD 1057
            +TL+D +G   ++++        +      IL VSG V   D
Sbjct: 961  ITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHAD 1002