Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score = 1687 bits (4369), Expect = 0.0
 Identities = 821/1158 (70%), Positives = 974/1158 (84%), Gaps = 1/1158 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS P+F+HLR+HSDFSM DGL+KV P++ K  A GM A+ALTD  NLCGLVKFYST H+ 
Sbjct: 1    MSQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDK 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPIIGADF +    F DE   +T+LA +N GY+NLT LIS+AYLRG VQ +  ID+ W
Sbjct: 61   GIKPIIGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L+ +  G+++LSG K G++G+AL+KGN  Q     +FYQ HF D +++ELIRTGRADEE+
Sbjct: 121  LLTYNSGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADEET 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+  A +  LPVVATN+VVF++ E FEAHEIRVAIHDG+TL D RRPK YS +QYL
Sbjct: 181  YLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYL 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            RSE EMCELF+DIPEA+ N+VEIAKRCNVTVRLGEYFLPNFPTG ++  DFLV +S+EGL
Sbjct: 241  RSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGELSTADFLVERSKEGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERLEFLFPDP  RA++R EYDERL +EL VINQMGFPGYFLIVMEFIQW KDN IPVGP
Sbjct: 301  EERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD+RD+VIDHVAE
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            +YGR+AVSQIITFGTMAAKAV+RDVGRVLGH +GFVDRISK++PP+PGMTL KAF  EP 
Sbjct: 421  LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPG 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            LQE YDADEEVK+LID  R LEG TRNAGKHAGGVVI+PT ITDF+P+YCDAEG  PVTQ
Sbjct: 481  LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVE AGLVKFDFLGLRTLTIIDWALG++NPRL K GKPPV I AIPLDD++SF  L
Sbjct: 541  FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFSVL 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            +  +TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFIDRKHG E 
Sbjct: 601  KRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            ISYPD  WQHESLK ILEPTYGIILYQEQVMQIAQ L+GYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  ISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQRA F+ G+ KNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH+P+
Sbjct: 721  AKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            EFMAAVM+ADMDNT+K+V LVDEC  MGL ++PPD+N GL++F VD++  IVYGIGAIKG
Sbjct: 781  EFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGP+EAILEAR K G F DLFDFCARIDLKK+NKRVIEKLI +GALD LGPHRA+MMA
Sbjct: 841  VGEGPVEAILEAR-KDGPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPHRASMMA 899

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            ++ +A++AA QH +A+A GQ DMFG+L D  ++ +Q++ +   WP+K+ LEGERETLGLY
Sbjct: 900  TLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWPDKIWLEGERETLGLY 959

Query: 961  LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD 1020
            LTGHP+++YLKEL  YTS RL +  PT R +++  AGLV+A+RVM TKRG+++GL+TLDD
Sbjct: 960  LTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRGSKMGLLTLDD 1019

Query: 1021 RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA 1080
            +S R+EVML++EA +++   LEKD+IL+  G+VSFDDF+GG +M+AR ++D+  AR  FA
Sbjct: 1020 KSARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTARNIIDISEARSHFA 1079

Query: 1081 RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT 1140
            + L + +   Q  +   ++F  ++ P + G VP+ V + R DA  RL LG +WRV PSD 
Sbjct: 1080 KALEVDLASQQATEAMLDKFFDVITPWKGGAVPLIVNFSRADASGRLQLGDDWRVDPSDD 1139

Query: 1141 LLDELKQLLGHDQVELEF 1158
            L+  L+ L+G D++ ++F
Sbjct: 1140 LVLALQTLIGPDKIRIQF 1157