Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1170 a.a., DNA polymerase III, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  823 bits (2125), Expect = 0.0
 Identities = 477/1107 (43%), Positives = 666/1107 (60%), Gaps = 39/1107 (3%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H+  SM +G  +V  LVK  A MGMPA+A+TD  NL G ++   TA + GV+PI
Sbjct: 20   FVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDMGVQPI 79

Query: 66   IGADFTLQSEE-----FG-------DELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113
            IG    +++EE     FG        +   + LLAKN  GY NL  ++S++++ G     
Sbjct: 80   IGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSEA 139

Query: 114  PVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173
            P +  A +    +GLI+L+GG  G +GR L +G + +    +  ++ HF D  Y+E+ R 
Sbjct: 140  PQVRLADIEALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVEIQRH 199

Query: 174  GRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 233
            G ADE+      +D+A   ++ +VATNE  +     FEAH++ + +     + D  R + 
Sbjct: 200  GMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGDETR-RR 258

Query: 234  YSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFL 292
             +P+ Y +   EM  LFAD+PEA+ N++ IAKRC V     +  LP+ P   G    + L
Sbjct: 259  LTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKGRTEAEAL 318

Query: 293  VMKSREGLEERLE-FLFPDPEVRAKR---RPEYDERLQVELDVINQMGFPGYFLIVMEFI 348
               + EGL++RLE  ++ +    A+R      Y ERL  ELDVI +MGFPGYFLIV +FI
Sbjct: 319  CAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPGYFLIVADFI 378

Query: 349  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCM 408
            QW+KD DIPVGPGRGSGAGS VA+AL ITDLDPL + LLFERFLNPERVSMPDFD+DFC 
Sbjct: 379  QWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQ 438

Query: 409  DKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG 468
            D+R++VI +V   YG + V+QIITFG + A+AV+R VGRVL  P G+VD+I K+VP +P 
Sbjct: 439  DRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVPNNPA 498

Query: 469  --MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526
              +TL++A  AEP L++L   DE V  L+D    LEG   +A  HA GVVI    + +  
Sbjct: 499  APVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIGDRPLDNLV 558

Query: 527  PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRI 586
             +Y D   + PVTQF+   VE AGLVKFDFLGL+TLT++  A+  +  R        V +
Sbjct: 559  ALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKR-----GITVDL 613

Query: 587  EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646
              +PLDD RS+  L   +T+ VFQLES GM+++++ ++PD  EDI+A+VAL+RPGP+ + 
Sbjct: 614  LDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGPMDN- 672

Query: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706
             + ++I RK G E + Y      H+SL+ IL+ TYGI++YQEQVMQ AQ+++GY+LGGAD
Sbjct: 673  -IPSYIKRKKGEEEVVY-----LHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGAD 726

Query: 707  MLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766
            +LRRAMGKK   EM  QRA+F EGA K G     A ++FD + KFAGYGFNKSH+AAY L
Sbjct: 727  LLRRAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGL 786

Query: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD 826
            V+YQT +LK +YP EFMAA MT DM NT+K+     E + + + +LPPD+N     F V+
Sbjct: 787  VAYQTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVE 846

Query: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886
            D GA+ Y +GA+K VG   ++A++  R   G FKDL DF  R+D K +NKR++E LI AG
Sbjct: 847  D-GAVRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAG 905

Query: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPE 946
            ALD L   RA ++A+ D  +R A    +  A  Q+ +FG    A  E   K+     W  
Sbjct: 906  ALDSLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGG-AGATSEPPMKFRACAAWTI 964

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI---AAR 1003
               L  ER+ +G YL+ HP+D Y   L +     +       R        L +   A +
Sbjct: 965  TETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARK 1024

Query: 1004 VMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLK 1063
                K G+R   + L D +G  E M++SE L    E L+  + L+V      +     L 
Sbjct: 1025 ERIGKSGSRYAFVELSDATGSCETMVFSEVLGASRELLDSGRPLLVRADARLEGEEVRLL 1084

Query: 1064 MSAREVMDLGSAREKFARGLSISILQS 1090
              A E++D   AR   AR + +S   S
Sbjct: 1085 AQAIELLDDAVARA--ARRIKVSFSDS 1109