Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1127 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  320 bits (819), Expect = 5e-91
 Identities = 287/1090 (26%), Positives = 486/1090 (44%), Gaps = 101/1090 (9%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P +  L + ++F+ + G S    L+ + A +G+ A+A+TD  +L G+V+ +S        
Sbjct: 26   PDYAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELKRD 85

Query: 64   PIIGADFTLQSE-------EFG--DELTKLT------------LLAKN-----------N 91
            P        Q +       E G    L K T            L+ +N            
Sbjct: 86   PQDALKIRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIALPCDR 145

Query: 92   VGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQV 151
              YK L  L++    R   + Q ++    +++  +G+I++          AL K      
Sbjct: 146  SAYKRLARLLTLGKRRAE-KGQCLLYAEDMIDACKGMILI----------ALPKETLSNA 194

Query: 152  ERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFE 211
               I+     F +H +L         +++YL     +A+    P+VA  +V+       +
Sbjct: 195  VSDIQKIGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHRANRRQ 254

Query: 212  AHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTV 271
              ++   + +   ++D       + ++ L++ A+M  +F D P AL  + EIA RCN  +
Sbjct: 255  LADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANRCNFDL 314

Query: 272  RLGEYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDV 331
                Y  P+    G   +D L   +REGL+ R     PD  ++          ++ EL  
Sbjct: 315  SELSYEYPHEEAEGETPQDRLERLAREGLKRRYPDGPPDRAIKL---------MEKELSA 365

Query: 332  INQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERF 391
            +  + FP YFL V + +Q+++   I +  GRGS A S++ Y L ITD+ P    ++FERF
Sbjct: 366  VKDLEFPAYFLTVHDIVQFARSKGI-LCQGRGSAANSILCYLLGITDVSPDMIAMVFERF 424

Query: 392  LNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 451
            ++  R   PD DVDF  ++R++VI  + + YGR       T      +A IR+VG+V+G 
Sbjct: 425  VSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIREVGKVMGL 484

Query: 452  PFGFVDRISKLVPPDPGMTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKH 511
                   +S  +      +++   I E  L      D  + + I     + G  R+  +H
Sbjct: 485  SQDVTAGLSGQIWGMSNGSVDLERIRELGLNL---EDRRLMQTIRLIGEIIGFPRHLSQH 541

Query: 512  AGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGL 571
             GG VI+   + + API   A  N  V  +DK+D++   ++K D L L  LT I  A  L
Sbjct: 542  VGGFVITSGRLDELAPIENAAMENRTVICWDKDDIDALRILKVDILALGMLTCIRKAFAL 601

Query: 572  VNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDI 631
                +++       I  IP  D  ++  L  A    VFQ+ESR     + R++P  F D+
Sbjct: 602  ----MQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPREFYDL 657

Query: 632  IALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVM 691
            +  VA+ RPGP+Q  MV  +I R++G E    PD       L+++   T G+ L+QEQ +
Sbjct: 658  VIEVAIVRPGPIQGDMVRPYIRRRNGLEK---PDP--FGPQLEQVTRRTKGVPLFQEQAL 712

Query: 692  QIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEK 750
            QIA V +G++   AD LRR++   ++   ++K R  F  G  KN    E+A + F  +E 
Sbjct: 713  QIAVVGAGFSAEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREIAERCFGQIEG 772

Query: 751  FAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLT 810
            FA YGF +SH+AA+A+++Y + WLK H+PA F  A++ +          +V + ++ G+ 
Sbjct: 773  FADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDVRDHGIE 832

Query: 811  VLPPDINSGLYRFNV----DDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFC 866
            V P  +N   +  ++    D   A+  G   IKG  E     I+ AR  G  + D     
Sbjct: 833  VRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNG--YIDPEHLW 890

Query: 867  ARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAA-----SQHHQAEAFGQA 921
             R  L       +E+L  A A   +G  R   +  V      A     +     EA  + 
Sbjct: 891  LRAGLAPA---ALERLAEADAFSSMGISRRDALWQVKSITTPAPLPLFNDQLDGEAINEP 947

Query: 922  DMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRL 981
            ++        EEV + Y                 ++ L L  HP+ E L+      +C  
Sbjct: 948  NVMLPRMHLGEEVVEDYV----------------SMRLSLRAHPM-ELLRPTLPGLTC-- 988

Query: 982  NEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWL 1041
            N+       Q ++V GLVI  +   T  G  +  +TL+D +G   V+++ +  +R+   +
Sbjct: 989  NDQLIKAPLQRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVWKKIYERFRRIV 1046

Query: 1042 EKDKILVVSG 1051
               ++L V+G
Sbjct: 1047 MGGRLLCVTG 1056