Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1170 a.a., DNA polymerase III subunit alpha from Phaeobacter inhibens DSM 17395

 Score =  793 bits (2048), Expect = 0.0
 Identities = 480/1109 (43%), Positives = 662/1109 (59%), Gaps = 64/1109 (5%)

Query: 4    PKFIHLRIHSDFSMVDG---LSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            P+FIHLR H+++S+++G   L K+P L KK     MPA+A+TD  NL   ++F   A   
Sbjct: 5    PRFIHLRTHTEYSLLEGALRLKKLPDLCKKHE---MPAIAVTDSNNLFAALEFSVAASGA 61

Query: 61   GVKPIIGADFTLQ-SEEFGDELTK----LTLLAKNNVGYKNLTLLISKAYLR--GHVQHQ 113
            GV+PI+G    L+ +E    E  K    L LLA++  GY++L  L S  Y+R    + H 
Sbjct: 62   GVQPIMGCQVDLRFTEPTPGERPKPPAPLVLLAQSETGYEHLMKLNSCLYMREGSELAHV 121

Query: 114  PVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173
             + +   L  H+E +I LSGG  G VGR L  G +   E  ++  +  F D  Y+EL R 
Sbjct: 122  TLEE---LAAHSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYVELQRH 178

Query: 174  ----GRADEESYLHFA-LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228
                G+ + E       +++A   DLP+VATN+V F   E +EAH+  + I +G  ++  
Sbjct: 179  PGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGAYVDQA 238

Query: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAI 288
               +  + + Y +S+ EM  LFAD+PEA+ N+VEIAKRC       +  LP F    +A 
Sbjct: 239  EPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAYRRDPILPKFADDEVAE 298

Query: 289  EDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFI 348
               L   + EGL++RL  +       A    +Y ERL  EL +I  MGFPGYFLIV +FI
Sbjct: 299  ---LRRIANEGLQQRLAVI-----PHAVSVEDYQERLDFELGIIEGMGFPGYFLIVADFI 350

Query: 349  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCM 408
            QW+KD+DIPVGPGRGSGAGSLVAYAL ITDLDPL Y LLFERFLNPERVSMPDFD+DFCM
Sbjct: 351  QWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCM 410

Query: 409  DKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPD-- 466
            D+R++VI +V E YGRD V QIITFG + +KA +RD+GRVL  P+G VDR+SKL+P +  
Sbjct: 411  DRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGV 470

Query: 467  PGMTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526
              M++  +   EP L+E  + +E V  L+     +EG  R+AG HA GVVI    +    
Sbjct: 471  KPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGDRPLDALV 530

Query: 527  PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLK--------- 577
            P+Y D   + P TQF+   VE AGLVKFDFLGL+TLT+I  A+ L+    +         
Sbjct: 531  PLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHVAADGT 590

Query: 578  KAGKPPV----RIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIA 633
            +   PP     +I AIPLDD  ++     AKT AVFQ+ES GM + +KR++P C EDI+A
Sbjct: 591  QLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVA 650

Query: 634  LVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQI 693
            LVAL+RPGP+++  +  + + K+G   I     +  H  +  ILE T GII+YQEQVMQI
Sbjct: 651  LVALYRPGPMEN--IPVYCEVKNGLRKI-----QSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 694  AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAG 753
            AQV++ YTLGGAD+LRRAMGKK  E M  +R  F++GA +NGV  + A ++FDL+EKFA 
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 754  YGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDEC-KNMGLTVL 812
            YGFNKSH+AAYA+VSYQT WLK ++P EFMA VM  D+  T+K+    +E  K + L  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 813  PPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGY---FKDLFDFCARI 869
            PP +N     FNV   G +VY +GA+K VG   +  +  AR + G    F  LFDF  R+
Sbjct: 824  PPCVNRSEATFNV-VKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRV 882

Query: 870  DLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTD 929
            DLKKV KR +E L  AG  D+L P+R  +  S+   V  +S  H      Q  +FG   +
Sbjct: 883  DLKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG---E 939

Query: 930  APEEV-EQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNE--AAP 986
            A E++ E +    P+W    RL  E + +G YL+GHP+D+Y+  L +     L+E  A  
Sbjct: 940  AGEDLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKA 999

Query: 987  TRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKI 1046
             R      +AG+V   +   + RG R     L D SG  EV L+SE L++  E+LE    
Sbjct: 1000 ERGPFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLFSEVLEKSREFLETGAK 1059

Query: 1047 LVVSGQVSFDDFNGGLKMSAREVMDLGSA 1075
            +V++ + + +  +  LK+  R V  + +A
Sbjct: 1060 VVITAEATME--SDQLKLLVRSVGPVDAA 1086