Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1477 a.a., DNA polymerase III subunit alpha from Pedobacter sp. GW460-11-11-14-LB5

 Score =  700 bits (1807), Expect = 0.0
 Identities = 445/1242 (35%), Positives = 675/1242 (54%), Gaps = 113/1242 (9%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTA--HNCGVK 63
            F+HL  H+ FS++     +P LVK  AA  MPA+A+TD  N+ G   F +    HN   +
Sbjct: 261  FVHLHNHTQFSVLQSTISIPDLVKAAAAQKMPAVAMTDHANMMGAFHFVNNVLNHNKAAE 320

Query: 64   -------------------PIIGADFTLQSEEFG----DELTKLTLLAKNNVGYKNLTLL 100
                               PI+G +F + +        D   ++ LLAKN  GY NL  +
Sbjct: 321  AKNAAAIEAGERPTEVVMTPIVGVEFFVCNNHLDRTAKDNGYQMVLLAKNKKGYHNLAKM 380

Query: 101  ISKAYLRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQT 160
             S AY +G   + P ID+  + ++ + +IVLSG  SGE+   +L   + Q E  + +++ 
Sbjct: 381  SSIAYTKGFY-YVPRIDREVIEQYKDDIIVLSGNLSGEISNKILNMGESQAEEALIWWKN 439

Query: 161  HFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIH 220
             F D FY+E++R  + DE+      + +A ++ + +VATN   +I ++   AH+I + + 
Sbjct: 440  MFGDDFYVEVMRHNQEDEDRVNESLIALARKHAVKLVATNNTYYINKKDANAHDILLCVK 499

Query: 221  DGYTLEDP-RRPKNYS---PKQ--YLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLG 274
            DG     P  R + Y    P Q  Y +S  EM  LFAD+PEA+ N  EI  +  +     
Sbjct: 500  DGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKSLFADLPEAIVNIKEIVDKIEIYKLAR 559

Query: 275  EYFLPNFPTGGMAIEDFLVMKSREGLEERLE--FLFPDPEVRAKRR-----PEYDERLQV 327
            E  LP F       E+FLV +      +R E  FL       AK+R     PE  ERL  
Sbjct: 560  EVLLPKFDIP----EEFLVAEDEADGGKRGENKFLRHLTYEGAKKRYGVLTPEVTERLDF 615

Query: 328  ELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLL 387
            EL  I + G+PGYFLIV +FI  ++  D+ VGPGRGS AGS+VAY L IT++DP++YDLL
Sbjct: 616  ELQTIEKTGYPGYFLIVQDFIAEARRRDVSVGPGRGSAAGSVVAYCLWITNIDPIKYDLL 675

Query: 388  FERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGR 447
            FERFLNP+RVSMPD D+DF  + R +V+++V   YG   V+QIIT+GTMAAK+ IRD  R
Sbjct: 676  FERFLNPDRVSMPDIDIDFDDEGRGRVMEYVIGKYGSSQVAQIITYGTMAAKSSIRDTAR 735

Query: 448  VLGHPFGFVDRISKLVPPDPGMTLEKAF-IAEPALQELYDADE-----EVKEL------- 494
            VL  P    D+I+KL+P    M L K F + E  L+E    DE     E+K L       
Sbjct: 736  VLDLPLFEADKIAKLIP---NMKLAKIFTLDEKTLKEALRPDEYERVVELKNLGGLKDLS 792

Query: 495  ---IDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGL 551
               I + +ILEG  RN G HA GV+I+P+ IT+F P+    + +  VTQFD + VE+AGL
Sbjct: 793  AETIQQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDLYVTQFDNSVVESAGL 852

Query: 552  VKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQL 611
            +K DFLGL+TLT+I   + LV  R      P    +  P+DD  ++   Q  +T  +FQ 
Sbjct: 853  LKMDFLGLKTLTLIKDTVKLVKKRFGIDLDP----DNFPIDDVLTYELFQRGETIGIFQY 908

Query: 612  ESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHE 671
            ES GM++ +K L+P  F+D+IA+ AL+RPGP++   + +F+ RK+G E I Y       +
Sbjct: 909  ESPGMQKYMKELKPTVFDDLIAMNALYRPGPME--YIPSFVRRKNGEEEIKY-----DLD 961

Query: 672  SLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGA 731
            + +E L+ TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK+ + + K +  F + A
Sbjct: 962  ACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVKQA 1021

Query: 732  EKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADM 791
             + G D     KI+   E FA Y FNKSHS  YA ++YQT +LK HYPAE+MAAV++ +M
Sbjct: 1022 AEKGHDATTLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM 1081

Query: 792  DNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILE 851
             + ++V   ++EC+ M +TVL PD+N    +F+V+  G + +G+ A+KGVGE  +E+I+E
Sbjct: 1082 SDIKQVAFFMEECRQMSVTVLGPDVNESDLKFSVNAKGEVRFGMSAVKGVGEKAVESIIE 1141

Query: 852  ARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAA--------MMASVD 903
             R   G + +++DF  R + + VNK+  E  + +GA D  G HRA          M  ++
Sbjct: 1142 ERLANGPYGNVYDFAKRSNTRIVNKKAYESFVYSGAFDAFGGHRAQYFYIGPNDKMNGIE 1201

Query: 904  DAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTG 963
              ++ A+     E+  QA +FG  + A   +E      PEW    RL+ E++ +G++L+G
Sbjct: 1202 KIIKYANDFQNNESTSQASLFGG-SKADLILEPSLPVSPEWALMDRLKYEKDAIGIFLSG 1260

Query: 964  HPVDEYLKELTKYTSCRLNEAA------------------PTRRDQSLTVAGLVIAARVM 1005
            HP+D Y  EL K+ +  + + +                     +++ L V GLV+ A   
Sbjct: 1261 HPLDNYKLELDKFCTHGVKQLSIINKVRMGDNNEDILAEFEKLKNRELCVGGLVVTASQR 1320

Query: 1006 TTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGG---L 1062
             TK G   G    +D     E+ L+ E   ++  +L +   L + G+V       G    
Sbjct: 1321 ITKTGKPFGTFVFEDYDDASEMALFGEDFLKFKSFLTEGYFLQIRGRVGERFGKAGDWEF 1380

Query: 1063 KMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVN--VYYQR 1120
            K++A  +M     R+K A+ L+I +   +++ Q       IL  ++A +   N  + +  
Sbjct: 1381 KITAINLM--SELRDKLAKSLTIQVPIERVNDQLMREIEAILADNKANSEQQNCQLNFAI 1438

Query: 1121 PDARARLTL---GTEWRVTPSDTLLDELKQLLGHDQVELEFN 1159
             D    + L       ++ PS+  L+   QLLG + V  + N
Sbjct: 1439 FDREKEIMLDMPSKNLKINPSNKFLE---QLLGLNVVNYKLN 1477