Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella loihica PV-4

 Score = 1722 bits (4461), Expect = 0.0
 Identities = 844/1158 (72%), Positives = 985/1158 (85%), Gaps = 1/1158 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS+P+F+HLR+HSDFSM DGL+KV P++ K +   M A+ALTD TNLCGLVKFY   H  
Sbjct: 1    MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHGA 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPI+G DF +    F DE   LT+LA NN GYKNLTLLIS AYLRGHV+ + VID+AW
Sbjct: 61   GIKPIVGCDFFMLVPGFEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGHVKDRAVIDQAW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L  ++EGLI+LSG K G+VG+ALLKGNQ QV+  + FYQTHF D +YLELIRTGR DEE 
Sbjct: 121  LERYSEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYLELIRTGRPDEER 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+++A + DLPVVATN+VVFI  E FEAHEIRVAI DG+TL DPRRP+ YS +QY 
Sbjct: 181  YLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPRRYSEQQYF 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            R + EMCELF DIPEAL NSVEIAKRCNVTVRLGEYFLPNFPTG ++IEDFLV  S++GL
Sbjct: 241  RIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVEVSKKGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERLEFLFPD   RA+RR EYDERL VEL VIN MGFPGYFLIVMEFIQW KDN IP+GP
Sbjct: 301  EERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD+RD+VIDHVAE
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            +YGRDAVSQIITFGTMAAKAV+RDVGRVLGHP+GFVDRISK++P +PGMTL KAF AEPA
Sbjct: 421  LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            L E YDADEEVK+LID CR+LEG TRNAGKHAGGVVI+PT ITDFAP+YCDAEG+ PVTQ
Sbjct: 481  LPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVITDFAPLYCDAEGHNPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVETAGLVKFDFLGLRTLTIIDWAL ++NP L K GK PVRIEAI LDD  SFR L
Sbjct: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKEPVRIEAIVLDDPASFRLL 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q  +TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFI+RKHGRE 
Sbjct: 601  QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            +SYPD++WQHESLK ILEPTYGIILYQEQVMQIAQVL+GYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  VSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR+VF+EGA KNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH+PA
Sbjct: 721  AKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            +FMAAVM+ADMDNT+K+V LVDEC+ MGL +LPPD+N GL+RF VDD+  IVYGIGAIKG
Sbjct: 781  QFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFRFTVDDDLNIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGP+E+IL+AR + G F DLFDFCAR+DLKK+N+RVIEKLI AGALD LGPHRAAMMA
Sbjct: 841  VGEGPVESILKAR-EDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGPHRAAMMA 899

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            ++ +A+RAA QH +AEA GQ DMFG+L   PE+ +Q++     WP+KV LEGER+TLGLY
Sbjct: 900  TLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTPWPDKVWLEGERDTLGLY 959

Query: 961  LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD 1020
            LTGHP+++YLKEL  YTS RL +  PT R ++   AGLV+A RVM TKRG+++GL+TLDD
Sbjct: 960  LTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATRVMMTKRGSKMGLVTLDD 1019

Query: 1021 RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA 1080
            +S R+EVML++EA +++ E LEKD+IL+V G+VSFDDF+GG +M+AR ++D+G AR  FA
Sbjct: 1020 KSARLEVMLFTEAFEKFGELLEKDRILIVEGEVSFDDFSGGNRMTARSIIDMGEARSHFA 1079

Query: 1081 RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT 1140
              + + +  + I  ++  +F   +EP +AG+VP+ + Y +P A+A+  LG EWRV P+D 
Sbjct: 1080 HAVEVDLDGASITPEWLGQFQQAVEPWKAGSVPLVINYAQPTAKAQFRLGDEWRVNPTDE 1139

Query: 1141 LLDELKQLLGHDQVELEF 1158
            L+  L+ L G D+V + F
Sbjct: 1140 LMLALETLTGSDKVRILF 1157