Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1078 a.a., DNA polymerase III, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  343 bits (879), Expect = 6e-98
 Identities = 302/1104 (27%), Positives = 497/1104 (45%), Gaps = 122/1104 (11%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L + S++S + G S    LV++   +G  A+ALTD  +  G+VK +  A  C +K 
Sbjct: 6    QYAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLKL 65

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYL---RGH---------VQH 112
            I+GA+F L    F        LLA     Y  ++ LI+ A     +G           Q 
Sbjct: 66   ILGAEFHLDEGLF-------VLLAPCRFAYGEISALITNARRSQGKGEYRVSLEAILAQQ 118

Query: 113  QPVI------------------DKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVER- 153
            Q ++                  D+A   +    L V    +S   G    KG+  Q +  
Sbjct: 119  QSLLLWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQSDEP 178

Query: 154  -CIEFYQTH-----------FADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 201
              +  Y+ H           F D  +L + R     E   L     +++   +P VA   
Sbjct: 179  NLLSRYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCVAAGG 238

Query: 202  VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 261
            V     E     +I   I  G  L+      + + +  L+  A   + +    E + N +
Sbjct: 239  VRMHEAERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRKRYPQ--EWIDNGL 296

Query: 262  EIAKRCNVTVRLGEYFLP-NFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPE 320
             +A+RC+ ++   +Y  P      GM   D+L    REG   R    FPD  V  + + +
Sbjct: 297  ALARRCHFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRR----FPDG-VPDRVKAQ 351

Query: 321  YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLD 380
            Y++    EL++I  M +  +FL + + + ++K   I +  GRGS A S+V Y L IT++D
Sbjct: 352  YEK----ELELIAAMAYEYFFLTIYDIVCFAKSQQI-LYQGRGSAANSVVCYCLGITEVD 406

Query: 381  PLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKA 440
            P + ++LFERF++ ER   PD DVDF  ++R++VI ++   YGRD  +          K+
Sbjct: 407  PTKINMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICYRFKS 466

Query: 441  VIRDVGRVLG----HPFGFVDRISKLVPPDPGMTLEKAFIAEPALQELYDADEEVKELID 496
             + DVG+ LG         +  I +  P     T   A + E     +         L+ 
Sbjct: 467  AMGDVGKALGIDAEQVALMIKNIDRRDPKHHWTTQLAAMLPEAGRGRM---------LLP 517

Query: 497  KCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDF 556
              + L G  R+  +H GG +IS   +++  PI   A  +  V Q+DK+D+E+ GL+K D 
Sbjct: 518  LVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVDI 577

Query: 557  LGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGM 616
            L L  LT I     L++   K      V  E     +A  +R LQ   +  VFQ+ESR  
Sbjct: 578  LALGMLTAIRKTFTLLSLPEKAFSMADVAWE-----EAEVYRMLQAGDSIGVFQVESRAQ 632

Query: 617  KELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEI 676
              ++ RL+P C+ D++  +A+ RPGP+Q  MV  ++ R+ G EA+ YP       +++ +
Sbjct: 633  SAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPS-----PAVESV 687

Query: 677  LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQRAVFQEGAEKNG 735
            L  T G+ ++QEQV+Q+A V +G++ G AD LRRAM   K+  E+ K  A   +G    G
Sbjct: 688  LSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAARG 747

Query: 736  VDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTE 795
                 A +I+  ++ F  YGF +SHSA++AL++Y + +LK HYPA F  A++ +      
Sbjct: 748  YSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMGFY 807

Query: 796  KVVGLVDECKNMGLTVLPPDIN-----SGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAIL 850
                L+ + +   + VLP  +N     + L      +  AI  G   +KG+    I+ ++
Sbjct: 808  SPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKTLI 867

Query: 851  EARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAAS 910
             AR +GG+ +                  +E+L   G    L      ++AS D  +  A 
Sbjct: 868  AARPEGGFTR------------------VEQLYELG----LSQGCLTLLASADALLTLAG 905

Query: 911  QHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDE 968
              +QA  +         +  D P    +     P   E   ++ +   LGL L G  V  
Sbjct: 906  HRYQARWQLSAYQPSLPLFDDLPAVASEVVLAPPS--EMAAMQSDYRHLGLSL-GRHVMA 962

Query: 969  YLKELTKYTSCR-LNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEV 1027
             L+ L  +  CR  +E A  R  Q + VAG+V+  +   T  G  +  +TL+D +G + V
Sbjct: 963  QLRGLAPFVGCRHASELADCRHGQLVHVAGVVVGRQRPGTASG--VTFVTLEDETGNINV 1020

Query: 1028 MLYSEALDRYAEWLEKDKILVVSG 1051
            +++S       +     KIL V+G
Sbjct: 1021 IVWSATARAQRQPFLTSKILKVTG 1044