Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1110 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  348 bits (892), Expect = 2e-99
 Identities = 324/1142 (28%), Positives = 532/1142 (46%), Gaps = 132/1142 (11%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P +  L   S+FS + G S    LV++   +G  A+A+TD  +  G V+ +  A   G+K
Sbjct: 13   PDYAELHCLSNFSFLRGASHPEELVQRAVELGYGALAVTDECSFAGSVRAHVAAKAAGLK 72

Query: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE 123
             I G +  L      D L KL LLA+N  GY NL+ LI+ A  R           A+ + 
Sbjct: 73   LIHGTEIVL-----ADGL-KLVLLAQNREGYGNLSALITLARRRAE-------KGAYRLT 119

Query: 124  HAEGLIVLSG-GKSGEVGRALL------KGNQQQVERCIEFYQTHFADHFYLELIRTGRA 176
              +    L G G SG +   L       + +         +    F    +L +      
Sbjct: 120  RGD----LEGFGPSGALPDCLALWVPGPQFDSPPDPADGRWLAQRFPGRSWLAVELHAGP 175

Query: 177  DEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSP 236
            D+   L     +A    LP++A  +V   +       ++  A+    T+       + + 
Sbjct: 176  DDRGRLEQLQQLAADCGLPLLAAGDVHMHSRARRPLQDVLTALRLNTTVFAAGHALHPNG 235

Query: 237  KQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMK 295
            +++LR    +  L+   PE LA ++ +A RC  ++    Y  P      G+    +L   
Sbjct: 236  ERHLRPRLRLARLYP--PELLAETLAVAARCTFSLDELRYEYPEEVVPHGLTPAAYL--- 290

Query: 296  SREGLEERLEFLFPD--PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKD 353
             R+ +E  L   +PD  PE +A+ + EY      EL +I ++ +  YFL V + +++++ 
Sbjct: 291  -RQEVEAGLAVRYPDGVPE-KARAQVEY------ELGLIARLQYEAYFLTVYDIVRFARS 342

Query: 354  NDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQ 413
             +I +  GRGS A S V YAL IT++DP + +LLFERF++ ER   PD DVDF   +R++
Sbjct: 343  REI-LCQGRGSAANSAVCYALGITEVDPAKSELLFERFISAERGEPPDIDVDFEHQRREE 401

Query: 414  VIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEK 473
            VI ++   YGR+  +      T   +  +RD GR LG  FG  ++I  L         + 
Sbjct: 402  VIQYLYAKYGRERAALTGALITYRTRGALRDAGRALG--FG-REQIDALAGTLAWWDRQD 458

Query: 474  AFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAE 533
                      L      V + +   R L G  R+  +H GG VIS   ++   PI   A 
Sbjct: 459  ELPERLRAVGLDPESPRVAKWLAVSRALRGFPRHLSQHVGGFVISRGPLSRLVPIENAAM 518

Query: 534  GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDD 593
                V Q+DK+D++  GL+K D L L  L+ I  AL ++  R  K    PVR++ IP + 
Sbjct: 519  AERSVIQWDKDDIDALGLMKVDVLALGMLSAIRRALDMLGARDGK----PVRLQDIPRES 574

Query: 594  ARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653
               +  L    +  +FQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ 
Sbjct: 575  KAVYDMLCRGDSLGIFQVESRAQMAMLPRLKPRQFYDLVVQVAIVRPGPIQGDMVHPYLK 634

Query: 654  RKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
            R+HG E I    EK    ++ ++L+ TYG+ ++QEQVMQ+A V +G+T G AD LRRAM 
Sbjct: 635  RRHGEEKI----EKIS-PAVDKVLQRTYGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMA 689

Query: 714  ---KKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
               +K   E  +Q+ +   G ++ G+    A +IF+ ++ F  YGF +SH+A++A++ Y 
Sbjct: 690  AWKRKGGLEPFEQKLI--RGMQERGLPESFARRIFEQIKGFGDYGFPESHAASFAILVYF 747

Query: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD--- 827
            + WLK   PA F+  ++ A          LV + +  G+TVLPPD+    +   + +   
Sbjct: 748  SAWLKRFEPAAFLCGLLNAHPMGFYAPAQLVQDAQRHGVTVLPPDVTHSAWESLLVELLP 807

Query: 828  ------NGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEK 881
                     +  G+  I G  +   E I+ AR +G  F+ + D  AR  L++     +E+
Sbjct: 808  GHPPARPRTVRLGLREIAGFNQAAAERIVAARQEGP-FQSVADLAARAGLQRPE---LER 863

Query: 882  LILAGALDRLGPHRAAM---MASVDDAVR-----AASQHHQ----------AEAFGQADM 923
            L  A AL  L  HR A     A+V++  +     + S H Q          A+A G+   
Sbjct: 864  LAAANALQALAGHRRAAAWESAAVENTGQPRHHGSRSGHGQEAEQRKERGGAQAPGRRSS 923

Query: 924  FGVLTDAP-------EEVEQKYTQVP-------------EWPEKVRLEGERE-------T 956
                T+A        +E +++   +P             E P  +    E E       T
Sbjct: 924  VSDATNATGRSKNGMDERDERVHSLPIQGDLFAALPPPVEAPPPLPTPTEGEDLVADYAT 983

Query: 957  LGLYLTGHPVDEYLKELT--KYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKR--GTR 1012
            LGL L  HP+      LT  ++ +     AAP R+        L  AA ++T ++  GT 
Sbjct: 984  LGLTLGRHPLALLRDRLTAGRFITAAELRAAPDRK--------LARAAGIVTHRQRPGTA 1035

Query: 1013 IGL--MTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070
             G+  +T++D +G + V+L  E +++        ++L V GQ+  +  +G   + A+ ++
Sbjct: 1036 SGIVFVTMEDETGPINVILRPELVEKQRRETLAARLLGVYGQL--ESRHGVTHLVAKRLV 1093

Query: 1071 DL 1072
            DL
Sbjct: 1094 DL 1095