Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1151 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score = 1085 bits (2807), Expect = 0.0
 Identities = 588/1168 (50%), Positives = 776/1168 (66%), Gaps = 26/1168 (2%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            M+DP+F+HLR+HS++S+ DG+ ++   V +  A G PAMALTD  N  GLVKFY+     
Sbjct: 1    MTDPRFVHLRLHSEYSITDGIVRLDDAVARAIADGQPAMALTDLANAFGLVKFYNACRGK 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            GVKP+ GAD  + +E   D   +L LL +++ GY  L  L+S+AYL    + +  I +AW
Sbjct: 61   GVKPVAGADVWIANETETDRPFRLLLLVRSHRGYLQLCELLSRAYLAEGRRDRAEIKRAW 120

Query: 121  LVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEE 179
              E   +GLI LSG K G+VG ALL GN+       + +   F   FYLE+ R G   +E
Sbjct: 121  FDEVGCDGLIALSGAKDGDVGDALLAGNRDLAAARAKAWSAQFPQAFYLEVQRAGHPQQE 180

Query: 180  SYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQY 239
              +    D+    +LP+VAT+ + F+  + F+AHE RV I +GY L D RRPK ++ +QY
Sbjct: 181  QLVSATADLGADLELPLVATHPIQFLDADDFKAHEARVCIAEGYVLGDRRRPKTFTEQQY 240

Query: 240  LRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSRE 298
             +++AEM ELFAD+PEAL N++EIAKRCN+T+ LG+ FLP FPT  G++++  L+ +++ 
Sbjct: 241  FKTQAEMAELFADLPEALENTLEIAKRCNLTLTLGKNFLPQFPTPDGISLDQHLINEAKA 300

Query: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
            GLE+RLE LFPDPE R +RRPEYDERL++E   I QMGFPGYFLIV +FI W K N +PV
Sbjct: 301  GLEKRLELLFPDPEERQRRRPEYDERLEIETKTIVQMGFPGYFLIVADFINWGKHNGVPV 360

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
            GPGRGSGAGSLVAY+L ITDLDPL+Y LLFERFLNPERVSMPDFD+DFC D R +VI++V
Sbjct: 361  GPGRGSGAGSLVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQDNRWRVIEYV 420

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFI 476
               YG DAVSQI TFGTM++KAVIRDVGRVL  P+ F D +SKL+P +    ++L +A  
Sbjct: 421  RHKYGVDAVSQIATFGTMSSKAVIRDVGRVLDLPYNFCDSLSKLIPVEANKPVSLAQALE 480

Query: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
             EP L+E  + +EEV EL +    LE  TRN G HAGGV+I+P  +TDF P+Y     + 
Sbjct: 481  MEPQLKEKMEEEEEVAELFELAMKLEDLTRNVGMHAGGVLIAPGKLTDFCPLYAQPGSDS 540

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
             V+Q+DK+DVE  GLVKFDFLGLR LTII+ A+  V    ++     + + ++P  D  +
Sbjct: 541  VVSQYDKDDVEKVGLVKFDFLGLRNLTIIELAVEYV----ERLTGEKLDLLSLPFTDPAA 596

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            ++ L+DA TTA+FQ+ES GMK+L+K+L PD FEDIIA++AL+RPGPL SGMVD+FI RK 
Sbjct: 597  YQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKK 656

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716
            G++ I Y      H  LK  L+PTYG+I+YQEQVMQI+Q++ GYTLGGADMLRRAMGKKK
Sbjct: 657  GQQKIDY-----FHPDLKGCLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKK 711

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
             EEMAK R    EGA+K G D  LA ++FDL+ KFA YGFNKSH+AAYA+V+Y T WLK 
Sbjct: 712  AEEMAKHRETIAEGAKKKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAMVTYHTAWLKA 771

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIG 836
            H+ + FMAA M++DMDNT+ V    ++    G+ VLPPD+N   YRF   D   I YG+G
Sbjct: 772  HHCSAFMAATMSSDMDNTDTVKIFYEDTVKNGIKVLPPDVNHSDYRFVPVDGKTIRYGLG 831

Query: 837  AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGP--H 894
            A+KG G+  +E IL AR +GG FKDLFDFC R+D + VN+R IE LI AGA D L P   
Sbjct: 832  AVKGTGQQAVECILAARAEGGPFKDLFDFCLRVDKRLVNRRTIEALIRAGAFDTLDPSRD 891

Query: 895  RAAMMASVDDAVRAASQ-HHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGE 953
            RA ++ASV  A+ AA Q    A   G  +MFG   DA  E  Q Y  V  W +K RL  E
Sbjct: 892  RAQLIASVSIAMEAADQAERNAHQGGLFEMFGSGDDAVAEAPQ-YVSVRPWSDKQRLLEE 950

Query: 954  RETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRI 1013
            +  LG + +GHP D    E  ++    L+  AP R  Q  T+AG+V+  RV  T RG R+
Sbjct: 951  KTALGFFYSGHPFDSIRSEAKRFAGRPLSALAPAREPQ--TLAGVVMDLRVKMTSRG-RM 1007

Query: 1014 GLMTLDDRS-GRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072
            G++ LDD S   +EV +YSE  D +   L+ D+ L++ G+VS DDF  GL++ A  +  L
Sbjct: 1008 GIIILDDGSCPSLEVTVYSEVFDAHRNKLKVDEPLIIEGKVSKDDFRDGLRIVAENLYTL 1067

Query: 1073 GSAREKFARGLSISILQSQIDQQFFERFSHILEPHR-AGTVPVNVYYQRPDARARLTLGT 1131
              AR +FAR L +S +  Q D +   +   +L P R  G  PV + Y+  +A+  L LG 
Sbjct: 1068 PEARTRFARQLRLS-MNGQADAR---KLQELLTPFRMEGGCPVRIAYRNGEAQCELILGE 1123

Query: 1132 EWRVTPSDTLLDELKQLLGHDQVELEFN 1159
              RV P D LL  L+  L    VEL++N
Sbjct: 1124 GTRVRPDDDLLQTLQDWLSPAGVELQYN 1151