Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1079 a.a., Probable DNA polymerase III (alpha chain) DnaE2 (DNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  402 bits (1034), Expect = e-116
 Identities = 321/1066 (30%), Positives = 501/1066 (46%), Gaps = 71/1066 (6%)

Query: 2    SDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCG 61
            S   +  L  HS +S +DG S    LV++ A +G+ A+ALTD   L G V+F   A    
Sbjct: 42   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 62   VKPIIGADFTL----QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVID 117
            V+ + GA+ +L    ++E        L +LA+   GY+ L+  ++ A+L G  + +P  D
Sbjct: 102  VRTVFGAELSLGATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPRYD 161

Query: 118  KAWLVEHAEG-LIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFA-DHFYLELIRTGR 175
               L E A G   +L+G + G V +AL +G     +R +      F      +EL   G 
Sbjct: 162  FDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIELTHHGH 221

Query: 176  ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 235
              ++        +A ++ + +VAT    F             AI    +L+         
Sbjct: 222  PLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWLAPL 281

Query: 236  PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIED-FLVM 294
               +LRS  EM  LFA  PEA+  + E+ +RC   ++L    LP F       ED +L  
Sbjct: 282  GGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDGHTEDSWLRS 341

Query: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354
                G  ER    +  P    K  P    +++ EL VI Q+ FPGYFL+V +  ++ +DN
Sbjct: 342  LVMAGARER----YGPP----KSAPRAYSQIEHELKVIAQLRFPGYFLVVHDITRFCRDN 393

Query: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414
            DI +  GRGS A S V YAL +T +DP+  +LLFERFL+P R   PD D+D   D+R++V
Sbjct: 394  DI-LCQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKV 452

Query: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKA 474
            I +V   YGRD  +Q+    T   ++ +RD+ R LG   G  D  SK V    G      
Sbjct: 453  IQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWTG------ 506

Query: 475  FIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEG 534
                    +  D D   +++ID    +    R+ G H+GG+VI    I D  P+      
Sbjct: 507  --------QADDVDGIPEQVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMA 558

Query: 535  NFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDA 594
            N  V Q+DK+D    GLVKFD LGL  L+ + +A  LV     +     V +  + L + 
Sbjct: 559  NRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLV----AEHKGIEVDLARLDLSEP 614

Query: 595  RSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDR 654
              +  L  A +  VFQ+ESR     + RL+P  F D++  VAL RPGP+Q G V  +I R
Sbjct: 615  AVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRR 674

Query: 655  KHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG- 713
            ++G + + Y     +H S+   L  T G+ L+QEQ+MQ+A   +G++   AD LRRAMG 
Sbjct: 675  RNGVDPVIY-----EHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGS 729

Query: 714  KKKPEEMAKQRAVFQEGAEK-NGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772
            K+  E M + R  F +G    +G   E+  +I++ +E FA +GF +SH+ ++A + + + 
Sbjct: 730  KRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSA 789

Query: 773  WLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIV 832
            W K H+PA F AA++ A          LV + +  G+ V  P +N+ L     ++ G  V
Sbjct: 790  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEV 849

Query: 833  -YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRL 891
              G+GA++ +G    E ++  R   G F  L D  +R+ L       +E L  AGAL   
Sbjct: 850  RLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQLSVPQ---VEALATAGALGCF 906

Query: 892  GPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLE 951
            G  R        +A+ AA     A A G+ D    +  +        + +P  P    L 
Sbjct: 907  GMSRR-------EALWAAG----AAATGRPDRLPGVGSS--------SHIPALPGMSEL- 946

Query: 952  GERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKR-- 1009
             E     ++ TG   D Y  +  +     +    P  R  S++    V+ A  +T ++  
Sbjct: 947  -ELAAADVWATGVSPDSYPTQFLRADLDAMG-VLPAERLGSVSDGDRVLIAGAVTHRQRP 1004

Query: 1010 --GTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
                 +  + L+D +G + V+       R+ +       L++ GQV
Sbjct: 1005 ATAQGVTFINLEDETGMVNVLCTPGVWARHRKLAHTAPALLIRGQV 1050