Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1184 a.a., Probable DNA polymerase III (alpha chain) DnaE1 (DNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  682 bits (1759), Expect = 0.0
 Identities = 431/1192 (36%), Positives = 654/1192 (54%), Gaps = 70/1192 (5%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HL  H+++SM+DG +K+ P++ +V  +GMPA+ +TD  N+ G  +FY++A   G+KPI
Sbjct: 10   FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69

Query: 66   IGAD--------FTLQSEEFGD------------ELTKLTLLAKNNVGYKNLTLLISKAY 105
            IG +        F  +   +GD              T LT++A+N  G +NL  L S A 
Sbjct: 70   IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129

Query: 106  LRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQ-VERCIEFYQTHFAD 164
              G +     +D   + EHAEG+I+ +G  SGEV   L  G  ++ +E   ++ +    D
Sbjct: 130  FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189

Query: 165  HFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYT 224
            +++LEL+  G   E       L++    ++P +ATN+  ++T ++   HE  + +  G T
Sbjct: 190  NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249

Query: 225  LEDPRRPKNYSPKQYLRSEAEMCELFAD-IPEALANSVEIAKRCN--VTVRLGEYFLPNF 281
            L DP R K      YL+S AEM +++ D +P A  +++ IA+R      V      +P F
Sbjct: 250  LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309

Query: 282  PT-GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGY 340
            P   G     +L  +   GL  R     PD          Y ER   E+DVI   GFP Y
Sbjct: 310  PVPDGHDQASWLRHEVDAGLRRRFPAGPPDG---------YRERAAYEIDVICSKGFPSY 360

Query: 341  FLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMP 400
            FLIV + I +++   I VGPGRGS AGSLVAYAL ITD+DP+ + LLFERFLNPER SMP
Sbjct: 361  FLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMP 420

Query: 401  DFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRV-LGHP-FGFVDR 458
            D D+DF   +R +++ + A+ +G D V+Q+ITFGT+  KA ++D  R+  G P F   DR
Sbjct: 421  DIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADR 480

Query: 459  ISKLVPPD-PGMTLEKAFIAEPA---------LQELYDADEEVKELIDKCRILEGCTRNA 508
            I+K +PP      +  + I +P+         ++ L + D +V+ +    R LEG  RNA
Sbjct: 481  ITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNA 540

Query: 509  GKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWA 568
            G HA  V++S   +T+  P++   +    +T +D    E  GL+K DFLGLR LTII  A
Sbjct: 541  GVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDA 600

Query: 569  LGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCF 628
            +   N R  +     + +E++PLDD  ++  L    T  VFQL+   M++L++R+QP  F
Sbjct: 601  ID--NVRANRG--IDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGF 656

Query: 629  EDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQE 688
            ED++A++AL+RPGP+     +++ DRK+ R+AI  P      E L+EIL  TYG+I+YQE
Sbjct: 657  EDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIK-PIHPELEEPLREILAETYGLIVYQE 715

Query: 689  QVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLV 748
            Q+M+IAQ ++ Y+L  AD+LR+AMGKKK E + K+   F +G + NG        ++D +
Sbjct: 716  QIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTI 775

Query: 749  EKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMG 808
              FA Y FNKSH+A Y +VSY T +LK +YPAE+MA ++T+  D+ +K    + +C+ +G
Sbjct: 776  LPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLG 835

Query: 809  LTVLPPDIN-SGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCA 867
            +TVLPPD+N SGL   +V  +  I YG+GA++ VG   + ++L+ RN  G F D  D+  
Sbjct: 836  ITVLPPDVNESGLNFASVGQD--IRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLN 893

Query: 868  RIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVL 927
            +ID+   NK+V E LI AGA D LG  R  +     DAV +     +AEA GQ D+FG  
Sbjct: 894  KIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSN 953

Query: 928  TDAPEEVEQKYT-QVP--EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEA 984
             D     +  +T +VP  EW +K +L  ERE LGLY++GHP    L  +    + +++ A
Sbjct: 954  DDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHP----LNGVAHLLAAQVDTA 1009

Query: 985  AP------TRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYA 1038
             P         D  + V G++ +      K G       L+D +G +EVM +      Y 
Sbjct: 1010 IPAILDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYG 1069

Query: 1039 EWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFE 1098
              +  D +++V+ +V+  D    L  +   V D  +A  +  R L++S+   Q       
Sbjct: 1070 ADIVDDAVVLVNAKVAVRDDRIALIANDLTVPDFSNA--EVERPLAVSLPTRQCTFDKVS 1127

Query: 1099 RFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQLLG 1150
                +L  H  GT  V++     D    L L    RVTPS  L+ +LK+LLG
Sbjct: 1128 ALKQVLARH-PGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKELLG 1178