Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1173 a.a., DNA polymerase III, alpha subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  889 bits (2297), Expect = 0.0
 Identities = 503/1175 (42%), Positives = 706/1175 (60%), Gaps = 56/1175 (4%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSD  F+HL  H+++S++DG  ++  L  K    GMPA A+TD  NL G V FY+T    
Sbjct: 1    MSD--FVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQF 58

Query: 61   GVKPIIGA------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQP 114
            G+KPIIG       D T ++ E       L LLA++N GY NL  L+S  +L G   ++P
Sbjct: 59   GIKPIIGCEVYVANDHTDKTSELARVRHHLVLLARDNEGYHNLVKLVSHGFLHGF-HYKP 117

Query: 115  VIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTG 174
             +D   L +++ G+  LS   +G+V RALL+       R    Y+  +  +FYLEL   G
Sbjct: 118  RVDMDLLRQYSGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSNG 177

Query: 175  RADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNY 234
              +++      +++A+   LP+VATN+  ++     EAH++ + I     ++D RR +  
Sbjct: 178  LKEQDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMRFE 237

Query: 235  SPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLV 293
            + + Y +S  EM + FA +P+A+AN+  IA++C V    G+Y  P +    GM +ED   
Sbjct: 238  TKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTLEDEFR 297

Query: 294  MKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKD 353
              SREGL+ RLE     P         Y +RL++ELDVI QMGFPGYFLIV +FI W+KD
Sbjct: 298  RLSREGLKRRLE---RHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINWAKD 354

Query: 354  NDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQ 413
            N IPVGPGRGS AGSLVA++L+IT+LDP+ Y+LLFERFLN ERVSMPD DVDFC  +R +
Sbjct: 355  NGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERRRTE 414

Query: 414  VIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEK 473
            VI +V E YG D V+QI TFG M AKAV+RDVGR LG  F   DRI+KLVP D  MT++K
Sbjct: 415  VIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMTVKK 474

Query: 474  AFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAE 533
            A  AEP L  LY  D ++++L+D    LEG +R+A  HA GVV+S   + ++ P+Y   +
Sbjct: 475  AIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLYRGKK 534

Query: 534  GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDD 593
            G   VTQFD   VE  GLVKFDFLGLRT+T++  +L      + + GK P  ++ + LDD
Sbjct: 535  GEI-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSL----DEIARQGKTPPDLDTLALDD 589

Query: 594  ARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653
            A ++       T  +FQ+ES GM++ ++ L+P CF+D+IA++AL+RPGPL SGMVD FI 
Sbjct: 590  AETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIK 649

Query: 654  RKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
            RKHG   ++YP       SL++ L  TYG+I+YQEQVMQIAQ+ +GYTLGGAD+LRRAMG
Sbjct: 650  RKHGEVPVTYP-----LPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMG 704

Query: 714  KKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773
            KK  EEM +QR  F EGA+KNGV    A +IFDL+EKFA YGFNKSHSAAYAL+SY T +
Sbjct: 705  KKNAEEMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAY 764

Query: 774  LKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVY 833
            LK H+P EFMAA++T++M N +K++  V  CK+MG+ VL P++ +    F V + GAIV+
Sbjct: 765  LKVHFPTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHE-GAIVF 823

Query: 834  GIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGP 893
            G+G IK VG+  I  I++AR +GG F  L D C R++L+KV KRV+E LI  GA D LG 
Sbjct: 824  GLGGIKNVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGC 883

Query: 894  HRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-----EVEQKYTQVPEWPEKV 948
             RA M+A++D+ V  A +  + +   Q  +F ++ + P        + +  Q  EW +  
Sbjct: 884  TRAGMLAALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQ 943

Query: 949  RLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTK 1008
            +L  E+E LG +LT HP+  Y KEL +     L E        SL  A LV   +   TK
Sbjct: 944  KLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTK 1003

Query: 1009 RGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVS---FDD--FNGG-- 1061
            +G R+  + ++D +   E + + E    + E L+ D+ L++   +S    DD   NGG  
Sbjct: 1004 KGARMAFLQVEDLTASGECVFFPEPYAEFRELLKSDQPLLLEATISKQQNDDGGRNGGGG 1063

Query: 1062 -------------------LKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSH 1102
                               +K+   +V+ L  A     + ++I +   +++         
Sbjct: 1064 DGMSGSAGMTEDDDDTPREIKLLGDKVIPLARACGASDQPVTIDMPLPRVEPASLAALRA 1123

Query: 1103 ILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTP 1137
            ILE HR G VPVNV     ++   L  G +W V P
Sbjct: 1124 ILERHR-GPVPVNVRLVVDESECLLQFGPQWMVQP 1157