Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1039 a.a., error-prone DNA polymerase from Marinobacter adhaerens HP15

 Score =  363 bits (931), Expect = e-104
 Identities = 294/1057 (27%), Positives = 496/1057 (46%), Gaps = 58/1057 (5%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MS  ++  L   S+F+ + G S    L ++   +G  A+A+TD  ++ G+ + ++     
Sbjct: 1    MSVQQYAELFCFSNFTFLTGASHPHELAERAHELGYTALAITDACSVAGIPRAWAALAES 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
             VK I G+ F L     G    +  LLA+   GY  L  LI+    R    H  +  +  
Sbjct: 61   PVKLITGSWFELSDAPAGATQPRFILLARTRKGYGQLCQLITTGRRRAEKGHYQLFYRDI 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
                    + L    S        + +  Q   C E+    F    ++   RT  + EE 
Sbjct: 121  ETHTLNDCLCLWLPPSPT------EADSDQALACGEWLARLFDPRIWIAAARTLESGEEQ 174

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             L     +A+Q  +PV A  EV   + E     ++  A+ +   LE+       + ++YL
Sbjct: 175  RLARIHWLADQLRIPVAAVGEVHMHSRERQPLQDVLTALRNHTNLENAGHCLFQNGERYL 234

Query: 241  RSEAEMCELFADIPEA-LANSVEIAKRCNVTVRLGEY-FLPNFPTGGMAIEDFLVMKSRE 298
            R    +  LF   PEA L  ++ IA +C        Y + P+    G     +L   +RE
Sbjct: 235  RPLPVLQRLF---PEAWLHETLAIASQCTFEPGSLRYEYPPDLVPEGETPAGYLKRLTRE 291

Query: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
            G   R    +PD         +    ++ EL +I++M +  YFL + + + +++   I +
Sbjct: 292  GERRR----YPDGTPL-----QVQSLIRKELGLISEMNYEHYFLTIHDIVDFARSRGI-L 341

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
              GRGS A S V Y L IT+++P   +LLFERF++ +R   PD DVDF  ++R++VI ++
Sbjct: 342  CQGRGSAANSAVCYCLGITEVNPARVELLFERFISKDRNEPPDIDVDFEHERREEVIQYI 401

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAE 478
               Y R+  +   T      K+ IRDVG+ LG     V+++ + +      T  +  I +
Sbjct: 402  YRRYTRERAALAATVIRYRPKSAIRDVGKALGFDPALVEQLLEGIDWRDKATNWRQQILD 461

Query: 479  PALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
              +       ++   L++    L G  R+  +H GG VIS   + +  P+   A  +  V
Sbjct: 462  KKITRNPQVADQFFTLVN---TLLGFPRHLSQHVGGFVISAGPLAELVPVENAAMTDRTV 518

Query: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
             Q+DK+D+E+ GL+K D L L  L+ I  AL L++    +    P RI+ IP +D  ++ 
Sbjct: 519  IQWDKDDLESLGLMKVDVLALGMLSAIRKALELISDEKGQ----PFRIQDIPQEDRDTYA 574

Query: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
             LQ   +  VFQ+ESR    ++ RL+P+ + D++  VA+ RPGP+Q  MV  ++ RKHG 
Sbjct: 575  MLQTGDSIGVFQVESRAQINMLPRLKPETYYDLVIEVAIVRPGPIQGDMVHPYLRRKHGL 634

Query: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717
            E + YP     +++++++LE T G+ ++QEQV+++A V +G++ G AD LRRAM   K  
Sbjct: 635  EPVDYP-----NDAVRKVLERTLGVPIFQEQVIKLAMVAAGFSAGEADQLRRAMAAWKSH 689

Query: 718  EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777
             ++   R     G  + G D + A +++  +  F GYGF +SH+A++AL+ Y + W+K H
Sbjct: 690  GDLTPFREKLVTGMLERGHDADFAERLYQQICGFGGYGFPESHAASFALLVYVSAWIKRH 749

Query: 778  YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD-DNGAIVYGIG 836
            YPA F  A++ +          LV + +   +TVLPPD+N+  +   +  +N  +  G+ 
Sbjct: 750  YPAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNASQWDHTLQGENRHLRLGLR 809

Query: 837  AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRA 896
             I+G+     E I + R   GY            L  +N+R +E L  A A+        
Sbjct: 810  IIQGLSVYGAERIHQNRPAEGY----RSASELRRLAALNQRDMELLAGANAM-------P 858

Query: 897  AMMASVDDAVRAASQHHQ-AEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERE 955
               A+   A      H Q  E F +        D  E       Q+PE  E   +  +  
Sbjct: 859  GFTANRHQAYWQLLDHEQPTELFAEETAVDYQPDYCE-------QLPEPSEGQNVLADYA 911

Query: 956  TLGLYLTGHPVDEYLKELTKYTSC-RLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIG 1014
            + GL L  HP+   L++      C    +   T+    + VAGLV   +   +  G  + 
Sbjct: 912  SQGLTLQRHPL-ALLRDQGHLKFCLSAEQLKSTKAGIPVQVAGLVTGRQRPGSASG--VT 968

Query: 1015 LMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSG 1051
             +TL+D +G + V+++ E   R  + L   ++L V G
Sbjct: 969  FVTLEDETGNVNVVVWLETARRQRKPLLTARLLHVKG 1005