Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1158 a.a., DNA polymerase III, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1694 bits (4388), Expect = 0.0
 Identities = 829/1158 (71%), Positives = 973/1158 (84%), Gaps = 1/1158 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSDP+F+HLR+HSDFSM DG++KV P++ +V A GM A+ALTD  NLCGLVKFY   H  
Sbjct: 1    MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPIIGADF +Q   F DE   +T++A +N GY+NLT +IS+AYLRG VQ + VID+ W
Sbjct: 61   GIKPIIGADFWMQVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQVQGRVVIDQEW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L+ +  G+++LSGGK G++G+ALLKGN  QVE   EFYQ HF   ++LEL+RTGR DEE 
Sbjct: 121  LITYNPGILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEER 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+ VA++  +PVVATN+VVF+  E FEAHEIRVAIHDG+TL DPRRPK YS +QYL
Sbjct: 181  YLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            RSE EMCELFADIP ALAN+VEIAKRCNVT+RL EYFLPNFPTG M+IEDFLV  S++GL
Sbjct: 241  RSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGDMSIEDFLVDCSKKGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERL FLFPDP+VRA+RR EYDERL VEL VINQMGFPGYFLIVMEFIQW KDN IPVGP
Sbjct: 301  EERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD+RD+VIDHVAE
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            +YGR+AVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PP+PGMTL KAF  EPA
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            LQE YDADE+VK+LID CR LEG TRNAGKHAGGVVI+PT ITDF+P+YCDAEG  PVTQ
Sbjct: 481  LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVETAGLVKFDFLGLRTLTI+DWAL ++N    K G+ P+RIEAIPLDD  SFR L
Sbjct: 541  FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRSPIRIEAIPLDDPASFRLL 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q  +TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFI+RKHGRE 
Sbjct: 601  QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            +SYPD ++QHESLKE+L PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR++F+EGA KNGVDGEL+MKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH+P 
Sbjct: 721  AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPP 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            +FMAAVM+ADMDNT+K+V LVDEC+ MGLT++PPD+N GL++F VDD+  IVYGIGAIKG
Sbjct: 781  QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGP+E+ILEAR K G F DLFDFCARIDLKK+NKRVIEKLI AGALD LGPHRA+MMA
Sbjct: 841  VGEGPVESILEAR-KDGPFTDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMA 899

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            ++ +A+ AA QH +AEA GQ DMFG+L   PE+ +Q++ +   WP+K+ LEGERETLGLY
Sbjct: 900  TLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLY 959

Query: 961  LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD 1020
            LTGHP+++YLKEL  YTS RL +  PT R +++  AGLV+A RVM TKRG+++GL+TLDD
Sbjct: 960  LTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDD 1019

Query: 1021 RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA 1080
            +S R+EVML++EA +++   LEKD+IL+  G+VSFDDF GG +M+AR ++D+  AR  FA
Sbjct: 1020 KSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFA 1079

Query: 1081 RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT 1140
              L I +  SQ+     +     + P R G VPV + Y +  A+ +  L   WRV PSD 
Sbjct: 1080 SALEIDLEASQLTPSMLDSIEQAISPWRNGAVPVLINYSQAQAKGQFRLAEAWRVNPSDE 1139

Query: 1141 LLDELKQLLGHDQVELEF 1158
            L+  L+ LLG  +V + F
Sbjct: 1140 LVFALESLLGPHKVRIVF 1157