Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  899 bits (2322), Expect = 0.0
 Identities = 508/1176 (43%), Positives = 713/1176 (60%), Gaps = 47/1176 (3%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSD  F+HL  H+++S++DG  ++  L  +    GM A A+TD  NL G   FY+T  + 
Sbjct: 1    MSD--FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 58

Query: 61   GVKPIIGA-------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113
            G+KPIIG        D T ++ EF      L LLA+NN GY NL  L+++ +  G   ++
Sbjct: 59   GIKPIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGF-HYK 117

Query: 114  PVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173
            P +DK  L E+++GLI LS   +GEV R L+K          + Y + F   FYLEL   
Sbjct: 118  PRVDKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN 177

Query: 174  GRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 233
            G  ++E      +++A   +LP+VATN+  ++     EAH+I + I    T++DP+R + 
Sbjct: 178  GIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRF 237

Query: 234  YSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFL 292
             + + Y +S  EM + FA +PEA+AN+  IA+ CN+ +  G+YF P +    GM ++   
Sbjct: 238  ETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEF 297

Query: 293  VMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSK 352
               + EGL++RLE     P+        Y +RL+ EL VI  MGFPGYFLIV +FI W+K
Sbjct: 298  QRLAEEGLKKRLE---KHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAK 354

Query: 353  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRD 412
            +N IPVGPGRGS AGSLVA++L+IT+LDP+ YDLLFERFLN ERVSMPD DVDFC  +R 
Sbjct: 355  NNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRT 414

Query: 413  QVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE 472
            +VI +VAE YG D+VSQI TFG M AKAV+RDVGR LG  FG  DRI+KL+P D  MT++
Sbjct: 415  EVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIK 474

Query: 473  KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDA 532
            KA  AEP L  LY  D ++++L+D    LEG +R+A  HA GVVIS   ++++ P+Y   
Sbjct: 475  KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGK 534

Query: 533  EGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLD 592
            +G   VTQFD   VE  GLVKFDFLGLRT+T++  AL      + + GK P  ++ + LD
Sbjct: 535  KGE-TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDAL----DEITRQGKTPPDLDTLSLD 589

Query: 593  DARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652
            DA ++       T  VFQ+ES GM++ ++ L+P CF+DIIA++AL+RPGPL SGMVD FI
Sbjct: 590  DAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFI 649

Query: 653  DRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712
             RKHG   ++YP       SL+  L+PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAM
Sbjct: 650  KRKHGEVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAM 704

Query: 713  GKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772
            GKK  E MA++R  F +GA+KN +  E A +IFDL+EKFA YGFNKSHSAAYAL+SY T 
Sbjct: 705  GKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTA 764

Query: 773  WLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIV 832
            +LK H+P EFMAA++T++M N +K++  V  CK+M + VL P++      F V + G IV
Sbjct: 765  FLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHE-GRIV 823

Query: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892
            +G+G IK VG+  I  I++AR +GG +  L D C R++L+KV KRVIE LI  GA D LG
Sbjct: 824  FGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLG 883

Query: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-----EVEQKYTQVPEWPEK 947
              RA M+AS+D  V  A +  +     Q  +F ++ + P+       + +    PEWP+ 
Sbjct: 884  CTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDD 943

Query: 948  VRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTT 1007
             +L  E+E LG +LT HP+  Y KEL +     L EA        +  A LV   + + T
Sbjct: 944  QKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMT 1003

Query: 1008 KRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV--SFDDFNGG---- 1061
            K+G R+    ++D +   EV+ + E      E L+ D+ L++ G +    DD NGG    
Sbjct: 1004 KKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQG 1063

Query: 1062 ----------LKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGT 1111
                      +K+   +VM L  A       + + +   ++   +      ILE H+ GT
Sbjct: 1064 GDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK-GT 1122

Query: 1112 VPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQ 1147
            VPVNV+    ++   L LG  W V P     ++L +
Sbjct: 1123 VPVNVHMVVDESLCLLQLGPRWTVQPGPVFENDLNK 1158