Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1164 a.a., DNA polymerase III, alpha subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  773 bits (1996), Expect = 0.0
 Identities = 451/1081 (41%), Positives = 641/1081 (59%), Gaps = 52/1081 (4%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P+FIHLR+H+++S+++G  ++  L   VAA  MPA+A+TD  N+   ++        G++
Sbjct: 5    PRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSKAGIQ 64

Query: 64   PIIGADFTLQSE-----EFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDK 118
            PIIG    +  +     E       + LLA+   GY+NL  L +  Y+    Q  P I  
Sbjct: 65   PIIGCQVDVAFDPAAPGERPRAPAPVVLLAQTEAGYENLMALNTCLYVDKGGQ-LPQITV 123

Query: 119  AWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR--- 175
              L  +   LI L+GG  G +GR L  G + + +  +      F D  Y+EL R      
Sbjct: 124  EELAANGSDLICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYVELHRHPGDPL 183

Query: 176  -ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNY 234
             A+ E      LD+A   +LP+VATN+V F     +EAH+  + I +G  ++     +  
Sbjct: 184  CAETEPGF---LDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQQAPRRRL 240

Query: 235  SPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVM 294
            + + Y +S+ EM  LFAD+PEAL N++EIA+RC       +  LP F    +   + L  
Sbjct: 241  TDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEV---EELRR 297

Query: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354
            +SREGL+ RL  +       A    EY++RL+ ELD+I  MGFPGYFLIV +FI+W+KD 
Sbjct: 298  QSREGLKARLAVI-----PHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVADFIKWAKDR 352

Query: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414
             IPVGPGRGSGAGSLVAYAL ITDLDPL Y LLFERFLNPER+SMPDFD+DFCMD+R++V
Sbjct: 353  GIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEV 412

Query: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPD--PGMTLE 472
            I +V E YGRD V QIITFG + +KA +RDVGRVL  P+G VDR+SK++P +    +++E
Sbjct: 413  IHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIE 472

Query: 473  KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDA 532
            KA   EP L E   A+E V+ L+     +EG  RNA  HA GVVI    +    P+Y D 
Sbjct: 473  KALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLDKLVPLYQDP 532

Query: 533  EGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPR-------------LKKA 579
              + P TQF+   VE AGLVKFDFLGL+TLT+I+ A+ L+                   A
Sbjct: 533  RSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAADGTELYSPA 592

Query: 580  GKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFR 639
                  I AIPLDD  S++    AKT AVFQ+ES GM + ++R++P C EDIIALVAL+R
Sbjct: 593  PGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIEDIIALVALYR 652

Query: 640  PGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSG 699
            PGP+++  +  + + K+G       +    H ++  IL+ T GII+YQEQVMQIAQ ++G
Sbjct: 653  PGPMEN--IPKYCEVKNG-----LSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEMAG 705

Query: 700  YTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKS 759
            Y+LGGADMLRRAMGKK  E M  +R  F  GA +NGVD + A++++ L++KFA YGFNKS
Sbjct: 706  YSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFNKS 765

Query: 760  HSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDEC-KNMGLTVLPPDINS 818
            H+AAYA+VSYQT WLK ++P EFMA VM  D+  T+K+    +E  + +GL ++PP +N 
Sbjct: 766  HAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCVNR 825

Query: 819  GLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRV 878
                F+V + G +VYG+GA+K VG   +E ++  R     F  LFD   R+DLK+V KR 
Sbjct: 826  SRASFSVAE-GKLVYGLGALKNVGADAMELVVTGRGDKP-FATLFDLARRVDLKRVGKRP 883

Query: 879  IEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEV-EQK 937
            +E L  AGA D+L P+R  +  S+D  V  ++  H+  A  Q  +FG   +A E++ E +
Sbjct: 884  LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG---EAGEDLPEPR 940

Query: 938  YTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLT--V 995
                 +W    RL  E + +G YL+GHP+D+Y+  L +     L   A      +    +
Sbjct: 941  ILPCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKI 1000

Query: 996  AGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSF 1055
            AG +   +   + RG R   +   D +G  EV ++S+ L++  + LE  K +V+  + + 
Sbjct: 1001 AGTIAGRQERKSARGNRFAFVQASDPTGLYEVTVFSDTLEKVRDHLETGKNVVMQVEATL 1060

Query: 1056 D 1056
            +
Sbjct: 1061 E 1061