Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1083 a.a., DNA polymerase III alpha subunit DnaE2 from Caulobacter crescentus NA1000

 Score =  289 bits (740), Expect = 7e-82
 Identities = 276/1087 (25%), Positives = 476/1087 (43%), Gaps = 80/1087 (7%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            M  P +  L+  ++FS + G S    L     A+G+ A+ + D  +L G+V+ ++ A   
Sbjct: 1    MRPPVYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRR 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
             ++ + G        +F D    L     +   +  LT L++   LR       +  + +
Sbjct: 61   SIRVLTGCRL-----DFMDGAPSLLCYPTDREAFGRLTRLLTIGQLRAEKGECHLTWRDF 115

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            L +H+EG + L         R L    +Q + R             +L   R   A +  
Sbjct: 116  L-DHSEGQLGLIVPP-----RVLDDSFEQHLTRMAG----DLRGRSWLAASRAYAARDLQ 165

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             L     +      P+VATN+V++   E     ++   + +   +++       + ++++
Sbjct: 166  RLARLESLGRTSGAPIVATNDVLYHGPERRPLQDVISCVREHCAIQEAGFRLEANAERHI 225

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREG 299
            +S  EM  LF   P A+  +VEI +R    ++      P+ P   G      L   + +G
Sbjct: 226  KSPEEMARLFDRWPRAVERTVEIVERIGFDLKDIREQYPDEPVPPGKTAMQHLTDLTWKG 285

Query: 300  LEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 359
               R    +P+        P+   ++Q EL +I +M +P YF+ V + ++ ++   I + 
Sbjct: 286  AAWR----YPNGV-----SPKVTAQIQEELRLIEKMDYPNYFITVHDIVREARSMGI-LC 335

Query: 360  PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
             GRGS A S V + L +T +DP E+ LLF RF++  R   PD DVDF  D+R++V+ +V 
Sbjct: 336  QGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEHDRREEVMQYVF 395

Query: 420  EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEP 479
            + YGR   +   T      ++ IRDVG+ LG        ++  V    G  L +  +   
Sbjct: 396  QRYGRAYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAGTVWGSWGDGLPEDHLRNA 455

Query: 480  ALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVT 539
             L        E+   +     L G  R+  +H GG V++   + +  PI   A  +    
Sbjct: 456  GLD---PKAPEIARAVGLANDLIGFPRHLSQHVGGFVLTKRRLDETVPIGKAAMKDRTFI 512

Query: 540  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVR-IEAIPLDDARSFR 598
            ++DK+D+++ GL+K D L L  L  I  A+ ++    +  G+  ++ +  IP +    + 
Sbjct: 513  EWDKDDIDSLGLMKVDILALGMLHAIQRAMTMLR---EDHGQDWLKDLADIPKEVPGVYD 569

Query: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
             L  A +  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R++  
Sbjct: 570  MLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRNKE 629

Query: 659  EAISYPDEKWQH---ESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK- 714
            E + +P    +H   + L+EIL  T+G+ L+QEQ M +A   + +T   AD LR+AM   
Sbjct: 630  EPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQAMSLAIEAAKFTPDEADGLRKAMATF 689

Query: 715  KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
            +        R  F EG    G +   A + F  +E F+ YGF +SH+A++A + Y + W+
Sbjct: 690  RNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIEGFSHYGFPESHAASFAKLVYVSAWI 749

Query: 775  KTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPD------------INSGLYR 822
            K  +P  F AA++ A      +   LV + +  G+ VLPPD            I++G   
Sbjct: 750  KWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGVEVLPPDILTSDWDCTLAPISTGFRP 809

Query: 823  FNVDDN-----------GAIVYGIGAIKGVGEG-PIEAILEARNKGGYFKDLFDFCARID 870
              V  +            A+  G   IKG+ E   I  +L+AR +G          A   
Sbjct: 810  PRVRHDKVACQETRPRWKAVRLGFRQIKGLRETLDIPPLLKARGEGARTP------AEFA 863

Query: 871  LKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDA 930
               V ++ +E L  A A   +G  R   +     AV+     H+A    QA +   L   
Sbjct: 864  QGGVPQKALELLAEADAFASVGLSRREALW----AVKGLKGEHKAPV--QAPLLAGLPLF 917

Query: 931  PEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRD 990
             E V      +P       +  +  T  L L  HP+  Y   L              +  
Sbjct: 918  EERV-----ALPAMAATQEVAEDYRTTSLSLKAHPIGFYRSMLAARGVVPAERLLSLKDG 972

Query: 991  QSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVS 1050
              ++VAGLV+  +   T +G  +  +TL+D +G    +++ +  D     +     L+V 
Sbjct: 973  ARVSVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAVVWKDRFDAARNVVMTASFLIVH 1030

Query: 1051 GQVSFDD 1057
            G+V   D
Sbjct: 1031 GRVQRAD 1037