Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1143 a.a., DNA polymerase III alpha subunit from Caulobacter crescentus NA1000

 Score =  795 bits (2054), Expect = 0.0
 Identities = 463/1126 (41%), Positives = 665/1126 (59%), Gaps = 39/1126 (3%)

Query: 1    MSDPK---FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTA 57
            MSD +   F+HLR+ S +S+++G  K   + K  A   MPA  L D  NL G +++ S A
Sbjct: 1    MSDAEGQGFVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYA 60

Query: 58   HNCGVKPIIGADFTLQSEEFGD-----ELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQH 112
             + GV+PIIG    +     G          L LLA+N  GY NL+ L S AYL      
Sbjct: 61   KDAGVQPIIGCAIPVVGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELP 120

Query: 113  QPVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR 172
            +PV+  A + EH+EGLI+LSGG  G V      G   +    +      F D FY+EL R
Sbjct: 121  EPVVPWAKVAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQR 180

Query: 173  TGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDG-YTLEDPRRP 231
             G   + +     ++ A  +D+P+VATN+V F     ++AH+  + I DG +  +D RR 
Sbjct: 181  HGLPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERR- 239

Query: 232  KNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIED 290
               +P+ + +   EM +LFAD+PEA  N+++IA+RC   V   +  LP+FPTG G    +
Sbjct: 240  -RVTPEHWFKPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAE 298

Query: 291  FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQW 350
             L  ++REGL+ RLE L       +    EY +RL  EL +I +MGFPGYFLIV +FI+W
Sbjct: 299  ELEHQAREGLKMRLEGL-----TLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKW 353

Query: 351  SKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDK 410
             K + IPVGPGRGSGAGSLVA+ L ITDLDPL + LLFERFLNPERVSMPDFDVDFC ++
Sbjct: 354  GKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQER 413

Query: 411  RDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG-- 468
            R++VI +V E YGRD V+QIITFG++ A+AV+RDVGRV+  P G VDR+ K+VP +P   
Sbjct: 414  REEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAP 473

Query: 469  MTLEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPI 528
            +TL +A   EP L++    D  V   +D    LEG  RNA  HA G+VI    +T   P+
Sbjct: 474  VTLAQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPL 533

Query: 529  YCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEA 588
            Y D   + P TQF+   VE+AGLVKFDFLGL+TLT++D A+      LKK G   + +  
Sbjct: 534  YKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAV----KHLKKRGF-EIDLGK 588

Query: 589  IPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMV 648
            +P DDA+++  L   +T  VFQLES+GM++ +++++    E+I AL++L+RPGP+ +  +
Sbjct: 589  LPFDDAKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDN--I 646

Query: 649  DNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADML 708
            D F+D K GR+ +        H SL+ +L+ TYG+I+YQEQVMQIAQ+L+GY+LG AD+L
Sbjct: 647  DTFVDCKFGRKPVD-----TLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLL 701

Query: 709  RRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVS 768
            RRAMGKKK EEM  Q+  F  GA++  V  E +  IF+LV KFAGYGFNKSH+AAYA +S
Sbjct: 702  RRAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFIS 761

Query: 769  YQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDN 828
            YQT WLK + P EF AA M+ D+ NT+K+     + +  G+TV  PD+N     F V +N
Sbjct: 762  YQTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV-EN 820

Query: 829  GAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGAL 888
            G ++Y +GAI+ VG   ++ ++  R +GG F+D+FDF  RID ++VNKR IE L  AGA 
Sbjct: 821  GEVLYALGAIRNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAF 880

Query: 889  DRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKV 948
            D +  +RA ++AS D  +  A   H     GQ  +FG     P     + ++   W +  
Sbjct: 881  DSIHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFG---SDPGAGRPRLSKTENWNQVD 937

Query: 949  RLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRR--DQSLTVAGLVIAARVMT 1006
             L+ E   +G YLTGHP+++ +  L +  +  L EA        ++  + G+V   +   
Sbjct: 938  LLDEELSAVGFYLTGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERA 997

Query: 1007 TKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSA 1066
            ++ G +   ++L D +G  EV+   E+L +  + LE  K + +  +    D  G ++   
Sbjct: 998  SQSGEKFAFVSLSDPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARD--GEVRFFG 1055

Query: 1067 REVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTV 1112
             +   +  A E    GL + +  S  +    +R     +  + G V
Sbjct: 1056 DDAEPIEKAVENVVAGLRVHLSPSAAEIDALKRRLEPAQAQKGGEV 1101