Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., DNA polymerase III subunit alpha from Ralstonia sp. UNC404CL21Col

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 570/1184 (48%), Positives = 775/1184 (65%), Gaps = 47/1184 (3%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            M+ P+F+HLR+HS++S+VDG  ++   VK  A  GM A+ALTD  N  GLV+FY  A   
Sbjct: 1    MNSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGK 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            GVKPI+GAD  + + +  D+ T+L LL ++  GY NL  L+++A+L    + +  I   W
Sbjct: 61   GVKPIVGADVWITNHDERDKPTRLLLLVRDKQGYLNLCQLLARAWLSNQHRGRAEIAPEW 120

Query: 121  LVEH-------AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173
              E        A GL+ LSG  +G++G AL  GN     +    +   F   FY+EL R 
Sbjct: 121  FDEPGVENAPLATGLLALSGAMAGDIGMALANGNDALARKLATHWSRVFPGAFYIELQRA 180

Query: 174  GRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 233
            G A  E+Y+  A+ +A    LPVVAT+ V F+T + F AHE R  I +G  L +PRR + 
Sbjct: 181  GHAGTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANPRRARR 240

Query: 234  YSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFL 292
            ++ +QY +++ EMC LFADIP ALAN+V+IA+RCN+ + LG+  LP FPT  GM+++D+L
Sbjct: 241  FTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPLFPTPDGMSLDDYL 300

Query: 293  VMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSK 352
            V  ++EGLE+R+E LFPD  VR  +R EY  RL+ E   I +MGFPGYFLIV +FI W+K
Sbjct: 301  VQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADFINWAK 360

Query: 353  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRD 412
            +N +PVGPGRGSGAGSLVAYAL ITDLDPL+Y+LLFERFLNPERVSMPDFD+DFC   RD
Sbjct: 361  NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD 420

Query: 413  QVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MT 470
            +VI +V E YG+DAVSQI TFGTMAAKA +RDVGRVL   + FVD ++KL+P  PG  +T
Sbjct: 421  RVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT 480

Query: 471  LEKAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYC 530
            LE+A   EP L E    +EEVK+L++  + +EG TRN G HAGGV+I+P  +TDF P+Y 
Sbjct: 481  LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT 540

Query: 531  D-AEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAI 589
               E    V+Q+DK+DVE  GLVKFDFLGL TLTI+DWA   +  R+    K       I
Sbjct: 541  QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYI--RMLDPSKADWNCSHI 598

Query: 590  PLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVD 649
            PL D ++F  L+ A T AVFQLESRGM+ ++K  +PD FEDIIALVAL+RPGP+   ++ 
Sbjct: 599  PLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMD--LIP 656

Query: 650  NFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLR 709
            +F  RKHGRE + YPD +     ++ +L+ TYGI++YQEQVMQ+AQ++ GY+LGGAD+LR
Sbjct: 657  SFCARKHGREKVEYPDPR-----VEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLR 711

Query: 710  RAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSY 769
            RAMGKKKPEEMA+ R +F+ GA K+G+  E A +IFDL+EKFAGYGFNKSH+AAYAL++Y
Sbjct: 712  RAMGKKKPEEMAQHRELFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAY 771

Query: 770  QTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNM-GLTVLPPDINSGLYRFNVDDN 828
             T WLK H+PAEFMAA M+  MD+T+KV  L D+ +   GLT+LPPDIN+  YRF   D 
Sbjct: 772  YTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRFAPTDA 831

Query: 829  GAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGAL 888
              I YG+G +KG G+G IE IL AR + G FKDLFDFC R+D ++VN+R IE L+ AGA 
Sbjct: 832  KTIRYGLGGVKGSGQGAIEDILRAR-EDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAF 890

Query: 889  DRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLT-DAPEEVEQKYTQVPEWPEK 947
            D L  +RA ++AS+  A+ AA Q  +A A  Q  +F +++ D  E+   +    P W  K
Sbjct: 891  DSLNANRAQLLASIGLAMEAAEQ--KAAAANQVSLFDLMSGDDAEQHRPELVDEPAWTTK 948

Query: 948  VRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAA------------PTRRDQSLTV 995
             +L+ E++ LG YL+GH  DEY  E+ ++    L + A              R  ++ TV
Sbjct: 949  RKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDARNKTV 1008

Query: 996  AGLVIAARVMTTKRGTRIGLMTLDDRSG--RMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
            AG+++  R   T+RG  + ++ LDD S     EV +++E  +      ++D++L+V G  
Sbjct: 1009 AGVIVGQRTQMTQRGKML-IVMLDDGSASEATEVTVFNEVFEANRALFKEDEVLIVQGSA 1067

Query: 1054 SFDDFNGGLKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGT-- 1111
              D F GG++++A  VMD+  AR KFAR + +S+           +   +L PH A    
Sbjct: 1068 RHDMFTGGVRVTAESVMDMTQARAKFARAIRLSM----NGDSTAAKLRDLLSPHVAADGN 1123

Query: 1112 -VPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQLLGHDQV 1154
             V V + Y    AR    LG  WR+ PS+  +  L+Q L  + V
Sbjct: 1124 GVSVRINYVCEQARCEAVLGDAWRIVPSEAAIAALRQALDAENV 1167