Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., error-prone DNA polymerase, DnaE-like from Paraburkholderia bryophila 376MFSha3.1

 Score =  365 bits (938), Expect = e-105
 Identities = 305/1078 (28%), Positives = 502/1078 (46%), Gaps = 101/1078 (9%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P +  L   S+FS + G S    L ++ A +G  A+A+TD  +L G+V+ +  A    + 
Sbjct: 9    PAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 64   PIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE 123
             IIG+ F L + + G     L LLAKN  GY NL+ LI+ A  R       +  +     
Sbjct: 69   FIIGSYFRLVNAD-GSPAFGLILLAKNREGYGNLSELITLARTRAPKGEYRLTPQDLSRP 127

Query: 124  HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLH 183
              E   +L       +        +  ++  +E+    F    ++ L+   RA ++ +  
Sbjct: 128  EKEYRHLLGLPDCLAILVPTFPAKEDVLDAQVEWLDETFPARAWVGLVLHQRAMDDIHRG 187

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
                VA   D+PVVA  EVV          +   AI  G  + +       + +Q+LRS 
Sbjct: 188  AVEFVARNRDVPVVALGEVVMHVRSRKPLQDTITAIRVGKPVHECGYELAPNAEQHLRSR 247

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREGLEE 302
              +  L++  PEALA +V+IA RC  ++    Y  P+     G     +L  ++  G + 
Sbjct: 248  LRLANLYS--PEALAATVDIAARCTFSLDELRYEYPDELIPPGFTPTAYLRQETYIGAQR 305

Query: 303  RLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            R     P             E+++ EL++I  + +  YFL V + +++++   I +  GR
Sbjct: 306  RFPSGIPH---------HVQEQIEHELELIADLQYEPYFLTVYDLVRFARSQHI-LCQGR 355

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S V Y L +T++DP   ++LFERF++ ER   PD DVDF   +R++VI ++   Y
Sbjct: 356  GSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQRREEVIQYIYRKY 415

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GRD  +      T  A+ V+R+ G+ LG     VD ++K                     
Sbjct: 416  GRDRAAIAAAVSTYRARGVLRETGKALGVDMQIVDAVAKS-------------------H 456

Query: 483  ELYDADEEVKELIDKCRI----------------LEGCTRNAGKHAGGVVISPTAITDFA 526
              +D   ++ +  ++C +                L G  R+  +H+GG VIS   +T   
Sbjct: 457  HWFDNSADLLKRFEECGLNPQTPLIRAWATLAAQLYGFPRHLSQHSGGFVISRGKLTRLV 516

Query: 527  PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRI 586
            P+   A     V Q+DK+D+E+ GL+K D L L  L+ I   L LV+ +  +       +
Sbjct: 517  PVENAAMAERSVIQWDKDDLESLGLLKIDVLALGMLSAIRRTLDLVSEQRGER----FEM 572

Query: 587  EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646
            + IP +D  ++  +  A T  VFQ+ESR    ++ R++P  F D++  VA+ RPGP+Q G
Sbjct: 573  QDIPSEDDATYDMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGG 632

Query: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706
             V  ++ R+ G E ++YP      + L+  L  T G+ ++QEQVMQ+A + +G+T G AD
Sbjct: 633  AVHPYLRRRQGFEPVTYPS-----KDLETALGRTLGVPIFQEQVMQVAILAAGFTAGEAD 687

Query: 707  MLRRAMGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYA 765
             LRRAM   K+   + K       G ++ G D   A  IF+ ++ F  YGF +SH+A++A
Sbjct: 688  QLRRAMAAWKRKGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFA 747

Query: 766  LVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDI-----NSGL 820
            L+ Y + WLK H P  F+AA++ +          LV + +  G++VLP D+     NS L
Sbjct: 748  LLVYASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVSVLPVDVTISGWNSSL 807

Query: 821  YRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKK---VNKR 877
             R       A+  G+  ++G+ EG  E I  AR        +  F +  DL +   +++R
Sbjct: 808  ERIADAARPAVRLGLSLLRGMKEGTAERIENAR-------AVRPFASAKDLARRAALDRR 860

Query: 878  VIEKLILAGALDRL-GPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQ 936
             +  L  A AL  L G  R A+  SV              A    DM  +       VE 
Sbjct: 861  DLHILADANALVSLAGNRREALWQSV-------------AAVPDKDMLAIAA-----VED 902

Query: 937  KYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTR--RDQSLT 994
            +  ++    E   +  +  ++GL L  HP++    +L    + RL  AA  R  RD  L 
Sbjct: 903  ETPELGAPSEAHDIVADYRSVGLTLGRHPLELLRPQL---LANRLMPAATLRTYRDGRLA 959

Query: 995  -VAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSG 1051
               GLV   +   T +G  +  +T++D +G + V+++   L++  +      +L V G
Sbjct: 960  RGCGLVTVRQRPGTAKG--VVFVTIEDETGNVNVIVWPSLLEKQRKEALSASLLAVYG 1015