Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1267 a.a., DNA polymerase III alpha subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  634 bits (1636), Expect = 0.0
 Identities = 421/1244 (33%), Positives = 652/1244 (52%), Gaps = 164/1244 (13%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKF--YSTAHNCG-- 61
            F+HL +H+ +S++DG + V  LV K    GM  +A+TD  N+ G+ +F  Y    N G  
Sbjct: 4    FVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGPK 63

Query: 62   -----------------------------------------VKPIIGADF-----TLQSE 75
                                                      KPIIG +      T+  +
Sbjct: 64   GEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVARRTMDLK 123

Query: 76   EFGDELT--KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHAEGLIVLSG 133
            E   + +   L +LAKN  GY NL  L+S A+ RG+   +P  D++ L ++ EGLIV S 
Sbjct: 124  EGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRGYYM-RPRTDRSELEKYHEGLIVCSA 182

Query: 134  GKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIR----TGRADEESYL------H 183
               GEV + +  G   + E  I++Y+  F D +YLE+ R      RA+ E Y        
Sbjct: 183  CLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQVNVNK 242

Query: 184  FALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
            +  + A +Y++ ++ TN+V F+ EE+ EAH+  + +  G  L+DP R   Y+ ++++++ 
Sbjct: 243  YLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRML-YTKQEWMKTR 301

Query: 244  AEMCELFADIPEALANSVEIAKRCNVTVRLGEYF----LPNFPTGGMAIEDF-------- 291
             EM ELFAD+PEAL+N++EI  +        EY+     P  PT  +  EDF        
Sbjct: 302  EEMNELFADVPEALSNTLEILDKV-------EYYSIDHAPIMPTFAIP-EDFGTEEGYRA 353

Query: 292  ------------------LVMKSREGLE--------ERLEFLFPDPEVRAKRR------- 318
                              +V+   EG          E+L  +  + +  AK         
Sbjct: 354  KYTEKDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRI 413

Query: 319  ------PEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN-DIPVGPGRGSGAGSLVA 371
                   E  ERL  EL ++  MGFPGYFLIV +FI  ++    + VGPGRGS AGS VA
Sbjct: 414  YGDPLSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVA 473

Query: 372  YALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 431
            Y L IT +DP++YDLLFERFLNP+R+S+PD DVDF  D R +V+  V   YG++ V+ II
Sbjct: 474  YCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHII 533

Query: 432  TFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVP---PDPGMTLEKAFIAEPALQELY-DA 487
            T+GTMA K  I+DV RV   P    DR++KLVP   PD  + L  A    P LQ     +
Sbjct: 534  TYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASS 593

Query: 488  DEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYC----DAEGNFPVTQFDK 543
            D  V++ +   ++LEG  R  G HA G +I    ITD+ P+      +      VTQ++ 
Sbjct: 594  DPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEG 653

Query: 544  NDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDA 603
            + +E  GL+K DFLGL+TL+II  A+   N RL ++ +  + ++ I + D  +++   D 
Sbjct: 654  SVIEDTGLIKMDFLGLKTLSIIKEAVE--NIRLSRSLE--IDVDQIDITDPATYKLYSDG 709

Query: 604  KTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISY 663
            +T   FQ ES GM++ ++ LQP  FED+IA+ AL+RPGP+    + +FIDRKHGR+ I Y
Sbjct: 710  RTIGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMD--YIPDFIDRKHGRKPIEY 767

Query: 664  PDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 723
                     +++ L+ TYGI +YQEQVM ++++L+ +T G +D LR+AMGKK  +++   
Sbjct: 768  -----DIPVMEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHM 822

Query: 724  RAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFM 783
            +  F EG  KNG D ++  KI+   EKFA Y FNKSH+  Y+ V+YQT +LK +YP+E+M
Sbjct: 823  KPKFIEGGRKNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYM 882

Query: 784  AAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGE 843
            AAVM+  + N   +  L+DECK MG+  L PD+N    +F V+ +G I +G+GA+KGVGE
Sbjct: 883  AAVMSRSLSNITDITKLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGE 942

Query: 844  GPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASV- 902
              +++I+E RN  G FK +FDF  R++L   NK+ +E L LAG  D     +     +V 
Sbjct: 943  AAVQSIVEERNTNGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVN 1002

Query: 903  -------DDAVRAASQHHQAEAFGQADMFG---VLTDAPEEVEQKYTQVPEWPEKVRLEG 952
                   +  +R  +++ + +      +FG   V+  A  E+ Q    V  W +  RL  
Sbjct: 1003 SKGEVFLETLMRYGNRYQEDKRAAINSLFGGANVVDIATPEIPQ---GVERWGDLERLNK 1059

Query: 953  ERETLGLYLTGHPVDEYLKELTKYTSCRL----NEAAPTRRDQSLTVAGLVIAARVMTTK 1008
            ER+ +G+YL+ HP+DE+   L    + R+    ++AA   R+  +T+ G+V + R   +K
Sbjct: 1060 ERDLVGIYLSAHPLDEFAIVLDHVCNTRMADLEDKAALAGRE--ITMGGIVTSVRRGVSK 1117

Query: 1009 RGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDF-NGGLKMSAR 1067
             G   G+  ++D SG  E+  +      Y  +L +   L +  +     +    L++   
Sbjct: 1118 NGNPYGIAKIEDYSGSTEIPFWGNDWVTYQGYLNEGTFLYIKARCQAKQWRQDELEVKIT 1177

Query: 1068 EVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGT 1111
             +  L   +E+  + ++I I  S ++       + + + H   T
Sbjct: 1178 SMELLPDVKEELVQKITIIIPLSVLNSGLITELATLTKEHPGNT 1221