Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1193 a.a., DNA polymerase III subunit alpha from Burkholderia phytofirmans PsJN

 Score =  308 bits (790), Expect = 1e-87
 Identities = 297/1162 (25%), Positives = 504/1162 (43%), Gaps = 149/1162 (12%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYS-------- 55
            P +  L   ++FS + G S    LV++  + G  A+A+TD  +L G+V+ ++        
Sbjct: 19   PAYAELHCLTNFSFLRGASHPHELVEQAMSRGYSALAITDECSLAGVVRAHTALKEIKTE 78

Query: 56   --------------------------------------TAHNCGVKP----IIGADFTLQ 73
                                                  TA     KP    IIG++  L 
Sbjct: 79   RERQQKEREDKANTAQSEAPSEDGTQIEASQQETAPQETAEAEAPKPLPHLIIGSELNL- 137

Query: 74   SEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLR---GHVQHQPVIDKAWLVEHA----- 125
            ++E GD    L  LA N  GY NL+ LI+ A  R   G  +  P    A L   A     
Sbjct: 138  TDETGDPFCTLVALATNRNGYGNLSELITLARSRADKGSYRLGPSDFTASLPHLAHLKTL 197

Query: 126  -EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFY--LELIRTGRADEESYL 182
             + +++L   ++  +   L         RC  +  +  A   +  LEL +TG  D +  +
Sbjct: 198  PDCVLMLVPQRTATLSHTL---------RCAHWLASFAAQRAWIALELWQTGSDDLQ--I 246

Query: 183  HFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRS 242
                 +++   LP+VA   V+          +   AI     L         + ++++R+
Sbjct: 247  DALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSQCGHALEANAERHMRT 306

Query: 243  EAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREGLE 301
               + +L+    + L  ++ IA  C  ++   +Y  P      G +   +L      G  
Sbjct: 307  RVRLGKLYPR--DTLEETLRIAALCRFSLDELKYEYPEELVPAGESPSSYLRKLVMAGAM 364

Query: 302  ERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG 361
            ER         +  KR  + ++    EL +I  + +  YFL V + + +++  +I +  G
Sbjct: 365  ERWP-----KGIDLKRIGQIEK----ELGLIADLKYEKYFLTVHDIVSFARSRNI-LCQG 414

Query: 362  RGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEM 421
            RGS A S+V Y L +T++DP+  ++L ERF++  R   PD DVDF   +R++VI ++   
Sbjct: 415  RGSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYTK 474

Query: 422  YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPAL 481
            YGR   +   +  T  A++ ++DVG+ LG     ++RISK      G      ++AE   
Sbjct: 475  YGRHRAALTASLITYHARSALKDVGKALGLEVSLIERISKSQQWWDGTDAVAKYLAEAG- 533

Query: 482  QELYDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
               +DA+  + + LI   + L    R+  +H GG VI+   ++   PI      +  V +
Sbjct: 534  ---FDANSHITQNLIRLTKELRAFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSVIE 590

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            +DK+D++   L+K D L L  L+ I  AL  V  R    G P   ++ IP +D   +   
Sbjct: 591  WDKDDIDALKLLKVDVLALGMLSAIRRALEFVALR---RGFPKFSVQDIPREDRAVYEMC 647

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
              A T  VFQ+ESR  + ++ RL+P+ + D++  VA+ RPGP+Q GMV  ++ RK G EA
Sbjct: 648  GHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEA 707

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEE 719
            + Y  ++     L+ +LE T G+ ++QEQVM +A V + YT   AD LRRAM   ++   
Sbjct: 708  VDYAKDE-----LRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRSGN 762

Query: 720  MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 779
            +AK +    E   K G + E   +I   +E F  YGF +SH+A++AL+ Y + WLK + P
Sbjct: 763  LAKYQKDLNERMLKRGYEQEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEP 822

Query: 780  AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIK 839
            A F+A ++ +          LV + K  G+ VLPPD+    +    +  G     I A +
Sbjct: 823  AAFLAGLLNSQPLGFYSPSQLVQDAKRHGVEVLPPDVTLSDWESTFERRGHEGQRISADE 882

Query: 840  GVGEGPIEAILEA----------------------RNKGGYFKDLFDFCARIDLKKVNKR 877
                   +A+L A                      R     F+    + AR    ++   
Sbjct: 883  TCLHRQ-QAVLSAQQLRDLSLRRLTVSRTVRRAAQRLTARVFQPSHTYGARGPAVRIGMH 941

Query: 878  VIEKLILAGALDRLGPHRAAMMASVDDAVRAAS------------------QHHQAEAF- 918
            +I+    A A   +     A    VDD  R A+                    H+ EA+ 
Sbjct: 942  LIKGFSQAAAERIMAARNEAPFTDVDDLARRAALTRRDLEALAAANALVSIAGHRREAWW 1001

Query: 919  ---GQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTK 975
                Q  +  +L DAP  + +    +P+  E   +  +  +LGL L  HP+      L +
Sbjct: 1002 AVTAQHTVPKLLRDAP--IAEAPLMLPQAAESREIVDDYASLGLTLNRHPLALLRARLAQ 1059

Query: 976  YTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALD 1035
            +      E A  +        G+V   +   T  GT    ++++D +G + V+++   ++
Sbjct: 1060 HRFRTAAELAACQHGTLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVIVWPSLVE 1117

Query: 1036 RYAEWLEKDKILVVSGQVSFDD 1057
            +  + L    +L V G +  DD
Sbjct: 1118 KQRKVLLGASLLAVYGVLQRDD 1139