Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1192 a.a., DNA polymerase III subunit alpha from Burkholderia phytofirmans PsJN

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 573/1211 (47%), Positives = 775/1211 (63%), Gaps = 75/1211 (6%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSDP+F+HLR+HS+FS+ DG+ ++  +VK  A  G  A+ALTD  N  GLV+FY  A   
Sbjct: 4    MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGK 63

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            GVKPI G D  + + +  D+ ++L LL K+  GY NL  L+SKA L    + +  ++  W
Sbjct: 64   GVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEVEAGW 123

Query: 121  LVEH-AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEE 179
            L     EGL+ LSG + G+VG AL  GN++  +R    +   F   FY+EL R+G+   E
Sbjct: 124  LESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRSGQPGGE 183

Query: 180  SYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQY 239
             Y+  A+ +A    LPVVAT+ + F+T + F AHE RV I +G  L +PRR K ++ +QY
Sbjct: 184  QYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTSEQY 243

Query: 240  LRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSRE 298
             R++ EM  LFADIP ALANSVEIAKRCN+T+ LG+  LP FPT  GM+++D+LV  S+E
Sbjct: 244  FRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE 303

Query: 299  GLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPV 358
            GLE+RLE L+PD   R  +R  Y  RL+ E   I +MGFPGYFLIV +FI W+K+N +PV
Sbjct: 304  GLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPV 363

Query: 359  GPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHV 418
            GPGRGSGAGSLVAYAL +TDLDPL Y+LLFERFLNPERVSMPDFD+DFC   RD+VI +V
Sbjct: 364  GPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV 423

Query: 419  AEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPG--MTLEKAFI 476
             E YG DAVSQI TFGTMAAKA +RD+GRVL   + F D I+KL+P  PG  +T+  A  
Sbjct: 424  KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMK 483

Query: 477  AEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNF 536
             EP LQE +D ++EV +L++  + +EG TRN G HAGGV+I+P  +TDF P+Y   + + 
Sbjct: 484  EEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESG 543

Query: 537  PVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARS 596
             V+Q+DK+DVE  GLVKFDFLGL TLTI+DWA   +  R     K    +  +PLDD  S
Sbjct: 544  VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYI--RRLDPSKQDWSLGQVPLDDPAS 601

Query: 597  FRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKH 656
            F  L+ A T AVFQLESRGM+ ++K  QPD FEDIIALVAL+RPGP+   ++ +F  RKH
Sbjct: 602  FSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMD--LIPSFCARKH 659

Query: 657  GREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKK 716
            GRE + YPD +     ++ +L  TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRRAMGKKK
Sbjct: 660  GREVVEYPDPR-----VESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKK 714

Query: 717  PEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKT 776
             EEMA+ R +F++GA KNG+  E A +IFDL+EKFAGYGFNKSH+AAYAL++Y T WLK 
Sbjct: 715  AEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKA 774

Query: 777  HYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFN--VDDNG----A 830
            H+PAEFMAA M+  MD+T+KV  L ++C    + VLPPD+N   YRF    + +G     
Sbjct: 775  HHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSKT 834

Query: 831  IVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDR 890
            I YG+GAIKG G+  IE IL AR +G  F D+FDFC R+D + VN+R +E LI AGA D 
Sbjct: 835  IRYGLGAIKGSGQNAIEEILRAREEGP-FIDIFDFCNRVDRRIVNRRTVEALIRAGAFDT 893

Query: 891  LGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRL 950
            L  +RA ++ASV  A+ AA Q   A A  QA +F  + DAP +  +   + PEWPEK +L
Sbjct: 894  LHANRAQLIASVSLAMEAAEQ-ASANAL-QAGLFD-MGDAPSQGHELVDE-PEWPEKKKL 949

Query: 951  EGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRG 1010
            + E+  LG YL+GH  D Y  E+ ++   ++ E    +  +   VAG++ + R   T+RG
Sbjct: 950  QEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGE---LKEGRDKLVAGVIASLRTQMTQRG 1006

Query: 1011 TRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVM 1070
              + +  LDD +G+ EV +++E  + + +  ++D++LVV GQ   D F GG++ +   VM
Sbjct: 1007 KML-IALLDDGTGQCEVTVFNETFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVM 1065

Query: 1071 DLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGT------------------- 1111
            DLG AR ++A  + +  +    D     R   +LE H AG                    
Sbjct: 1066 DLGRARCRYAEAVKVQ-MNGNADALALRR---VLEAHSAGKDEPQAVAAPAASSRGGNGG 1121

Query: 1112 ------------------------VPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQ 1147
                                    + V V Y+  +A   + LG  WRV P+D LL  L+ 
Sbjct: 1122 NGGGRNGGGYGGGGQRQAVQIPNGLAVQVVYRSQNAEGEMRLGDAWRVKPTDELLAALRG 1181

Query: 1148 LLGHDQVELEF 1158
                  +E+ +
Sbjct: 1182 EFAGSSIEIVY 1192