Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1049 a.a., DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  335 bits (858), Expect = 1e-95
 Identities = 293/1071 (27%), Positives = 494/1071 (46%), Gaps = 87/1071 (8%)

Query: 4    PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVK 63
            P++  L   ++FS + G S    LV + + +G   +A+TD  +L G+V+ +  A    + 
Sbjct: 9    PEYAELFAFTNFSFLRGASHGEELVLRASQLGYSGLAITDECSLAGVVRAHVEAKKEKLP 68

Query: 64   PIIGADFTL----QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKA 119
             +IG+ F L    +S  FG     L LLA+N  GY NL+  I+   +R   + + ++   
Sbjct: 69   LVIGSYFQLVNADRSPAFG-----LILLAQNREGYGNLSEFITLGRMRA-AKGEYLLTPH 122

Query: 120  WLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCI----EFYQTHFADHFYLELIRTGR 175
             + +  +G   L G        A+L  +    E  +    E+    FA   ++ L     
Sbjct: 123  DISKPEKGYTHLRGMPDC---LAILVPDFPATEDALAVQLEWMNDVFAGRAWVGLTLHQH 179

Query: 176  ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 235
            A ++ +      VA+QY +PVVAT  VV          +   AI    T+ +       +
Sbjct: 180  AMDDIHRGIVEHVADQYRVPVVATGNVVMHVRSRKPLQDTMTAIRLRKTVAECGYDLAPN 239

Query: 236  PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVM 294
             + +LRS   +  L+     AL  ++ I +RCN ++    Y  P+     G   E +L  
Sbjct: 240  AEGHLRSRFRLGNLYPT--RALYETLNILERCNFSLDELRYEYPDELVPEGFTHEAYLRQ 297

Query: 295  KSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDN 354
            ++  G   R     P             E+++ EL +I ++ +  YFL V + +++++  
Sbjct: 298  ETYIGAHRRYPNGIPH---------NVQEQIEHELQLIRELEYEAYFLTVYDIVRFARSQ 348

Query: 355  DIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQV 414
             I +  GRGS A S V Y L +T++DP   ++LFERF++ ER   PD DVDF   +R++V
Sbjct: 349  HI-LCQGRGSAANSAVCYCLGVTEVDPSRGNMLFERFISKERGEPPDIDVDFEHQRREEV 407

Query: 415  IDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPP-DPGMTLEK 473
            I ++   YGRD  +      T   +  +R+ G+ LG     VD+++K     D    L +
Sbjct: 408  IQYIYRKYGRDRAAIAAAVSTYRPRGALRESGKALGVDPQIVDKVAKSHQWFDHSADLLQ 467

Query: 474  AFIAEPALQELYDADEEVKELIDKCRI-LEGCTRNAGKHAGGVVISPTAITDFAPIYCDA 532
             F AE  L    D +  +  L  K    +    R+  +H+GG VIS   +T   P+    
Sbjct: 468  RF-AESGL----DPENPLIGLWAKLAAQILNFPRHLSQHSGGFVISRGKLTRLVPVENAT 522

Query: 533  EGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLD 592
              +    Q+DK+D+E  GL+K D L L  L+ I   L +V+ +  +       ++ IP +
Sbjct: 523  MADRSAIQWDKDDLEALGLLKIDVLALGMLSAIRRTLDIVSEQCGER----FEMQDIPPE 578

Query: 593  DARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652
            DA ++  +  A T  VFQ+ESR    ++ R++P  F D++  VA+ RPGP+Q G V  ++
Sbjct: 579  DAATYEMISRADTVGVFQIESRAQMSMLPRMKPREFYDLVIEVAIVRPGPIQGGAVHPYL 638

Query: 653  DRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712
             R+ G E ++YP      ++L+  L  T G+ ++QEQVMQ+A + +G+T G AD LRRAM
Sbjct: 639  RRRQGLEPVTYPS-----DALEVALGRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAM 693

Query: 713  GK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771
               K+   + K       G  + G   + A  IF  +  F  YGF +SH+A++AL+ Y +
Sbjct: 694  AAWKRKGGLDKYYDRIVNGMTERGYTKDFAESIFQQIHGFGEYGFPESHAASFALLVYAS 753

Query: 772  LWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDI-----NSGLYRFNVD 826
             WLK H P  F+AA++ +          L+ + +  G+ VLP D+     +S L R    
Sbjct: 754  SWLKCHEPEAFLAAMLNSMPLGFYSASQLIQDAQRHGVKVLPADVTISNWDSVLERETSA 813

Query: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886
               ++  G+  +KG+ +G  E I EA      F  + D   R  L + + +V   L  A 
Sbjct: 814  SRPSVRLGLSLLKGMKDGAAERI-EAARAVRQFSSVSDLARRAQLDRNDLKV---LAAAN 869

Query: 887  ALDRL-GPHRAAMMASV-----DDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQ 940
            +L  L G  R A+ ASV      D +  A    +  AFG          AP E E     
Sbjct: 870  SLSLLAGNRREALWASVAAVPDSDILADACVDDETPAFG----------APSEGED---- 915

Query: 941  VPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVI 1000
                     +  +  ++ L L  HP+      L +            R  +     GLV 
Sbjct: 916  ---------IVADYNSMSLTLGRHPLSLLRPALLEQRLMPAATLMTYRNGRLARGCGLVT 966

Query: 1001 AARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSG 1051
              +   T +G  +  +T++D +G + +++++   +++ + +    +L V G
Sbjct: 967  VRQRPGTAKG--VMFLTIEDETGNVNIIIWTSVQEKFRQEVLGASLLAVYG 1015