Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1158 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella sp. ANA-3

 Score = 1705 bits (4415), Expect = 0.0
 Identities = 836/1158 (72%), Positives = 976/1158 (84%), Gaps = 1/1158 (0%)

Query: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60
            MSDP+F+HLR+HSDFSM DG++KV P++ +V A GM A+ALTD  NLCGLVKFY   H  
Sbjct: 1    MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA 60

Query: 61   GVKPIIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAW 120
            G+KPIIGADF +Q   F  E   LT++A NN GY+NLT +IS+AYLRGHVQ + VID+ W
Sbjct: 61   GIKPIIGADFWMQVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGHVQGRVVIDQEW 120

Query: 121  LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
            LV + EG+++LSGG+ G+VG+ALLKGN  QVE   EFYQ HF   +YLEL+RTGR DEE 
Sbjct: 121  LVTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEER 180

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
            YLH A+ +A++  +PVVATN+VVF+  E FE+HEIRVAIHDG+TL DPRRPK YS +QYL
Sbjct: 181  YLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRRPKKYSEQQYL 240

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL 300
            RSE EMCELFADIP AL N+VEIAKRCNVT+RL EYFLPNFPTG M+IED+LV  S++GL
Sbjct: 241  RSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDYLVDCSKKGL 300

Query: 301  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
            EERLEFLFPDP+VRA+RR EYDERL VEL VINQMGFPGYFLIVMEFIQW KDN IPVGP
Sbjct: 301  EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP 360

Query: 361  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 420
            GRGSGAGSLVAYALKITDLDPLE+DLLFERFLNPERVSMPDFDVDFCMD+RD+VIDHVAE
Sbjct: 361  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE 420

Query: 421  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA 480
            +YGR+AVSQIITFGTMAAKAVIRDVGRVLGHP+GFVDRISKL+PP+PGMTL KAF  EPA
Sbjct: 421  LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA 480

Query: 481  LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ 540
            LQE YDADE+VK+LID CR LEG TRNAGKHAGGVVI+PT ITDF+P+YCDAEG  PVTQ
Sbjct: 481  LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ 540

Query: 541  FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNL 600
            FDKNDVETAGLVKFDFLGLRTLTI+DWAL ++N    K G+PPVRIEAIPLDD  SFR L
Sbjct: 541  FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL 600

Query: 601  QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA 660
            Q  +TTAVFQLESRGMK+LIKRLQPDCFED+IALVALFRPGPLQSGMVDNFI+RKHGRE 
Sbjct: 601  QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE 660

Query: 661  ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720
            +SYPD ++QHESLKE+L PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
Sbjct: 661  VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
            AKQR  F+EGA KNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH+P+
Sbjct: 721  AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS 780

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
            +FMAAVM+ADMDNT+K+V LVDEC+ MGLT++PPD+N GL++F VDD+  IVYGIGAIKG
Sbjct: 781  QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG 840

Query: 841  VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA 900
            VGEGP+E+ILEAR K G FKDLFDFCARIDLKK+NKRVIEKLI AGALD LGPHRA+MMA
Sbjct: 841  VGEGPVESILEAR-KDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMA 899

Query: 901  SVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY 960
            ++ +A+ AA QH +AEA GQ DMFG+L   PE+ +Q++ +   WP+K+ LEGERETLGLY
Sbjct: 900  TLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLY 959

Query: 961  LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD 1020
            LTGHP+++YLKEL  YTS RL +  PT R +++  AGLV+A RVM TKRG+++GL+TLDD
Sbjct: 960  LTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDD 1019

Query: 1021 RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA 1080
            +S R+EVML++EA +++   LEKD+IL+  G+VSFDDF GG +M+AR ++D+  AR  FA
Sbjct: 1020 KSARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFA 1079

Query: 1081 RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT 1140
              L I +  SQ+     E     + P R G VPV + Y +  A+ +  L   WRV PSD 
Sbjct: 1080 SALEIDLDASQLTPSVLESIEQSISPWRNGAVPVVINYSQAQAKGQFRLAENWRVNPSDE 1139

Query: 1141 LLDELKQLLGHDQVELEF 1158
            L+  L+ LLG ++V + F
Sbjct: 1140 LVFALESLLGPNKVRILF 1157