Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Slt family transglycosylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  410 bits (1053), Expect = e-119
 Identities = 220/512 (42%), Positives = 315/512 (61%), Gaps = 35/512 (6%)

Query: 11  LLLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETESVEEERVALTP 70
           LLL GCQ     D    D+  +NP  +  +                 TES   E+V    
Sbjct: 13  LLLSGCQLIPNGDIPADDETNINPTLEVVS----------------PTESDTREQVV--- 53

Query: 71  QEQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQRG 130
            E  D+WQR+        P +  V   R+  L NP HL+ + SRAEPFLYLI +++E+RG
Sbjct: 54  -EARDLWQRMQEGMHWEKPNEAYVAPFRQKLLANPRHLEQVFSRAEPFLYLIVDELERRG 112

Query: 131 LPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDAA 190
           LPLEL LLP +ES+FD  A SH SA+GLWQ      + +GLK N+WYDGR DV A+T AA
Sbjct: 113 LPLELALLPAIESAFDADAISHASASGLWQLTPPMARYFGLKMNWWYDGRNDVVASTRAA 172

Query: 191 LDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVPK 250
            D+L  L      +W++AIAAYNSGEGRV  A++ N+KAGKP D ++L LP+ET  YVP 
Sbjct: 173 ADFLEYLYDRTGNNWHYAIAAYNSGEGRVLSAVRHNEKAGKPTDIWALKLPRETRNYVPN 232

Query: 251 LIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAYN 310
           L+ALADV+ + +KYG+S+P I+N PV+  V+   Q++LA+AA  AGL+V EL+S NP + 
Sbjct: 233 LLALADVVKHADKYGVSLPRIKNEPVVDVVEIGSQIELALAAELAGLSVSELKSLNPGFK 292

Query: 311 QWATAPNGPHQLLIPVEKVERFNLAMEEN-RGKGIKVVRYKVKSGDTLSTIADKYNTTAK 369
           QWATAP GPH+L++PV     F +A+ +  + + ++  RY++K GD+LS IA ++ TT +
Sbjct: 293 QWATAPKGPHRLVVPVSNAPDFVVALAQTPQEQRVQWARYQIKRGDSLSVIARQFGTTPQ 352

Query: 370 VIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGE 429
           V+K+ NQ+ +NQ+  G  L VP + +   +  L+         + P+  Y+    V SG+
Sbjct: 353 VLKQVNQMKNNQLIAGKELVVPANGRTNASAQLA--------SATPKQSYK----VKSGD 400

Query: 430 SLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTL 489
           SLW IA+ + +    L KWN +  K  +R+GQ L +W  SK  +   R+ TY+V+ GD+L
Sbjct: 401 SLWKIAQAHGISVNDLKKWNSLGSKAIIRQGQLLTVWPGSKAVANT-RSTTYQVKRGDSL 459

Query: 490 SGIANKFKVKTADIVKWNDLNSTQYLKAGQQL 521
           S IA KFKVK ++++ WN L+S+  L+ GQ L
Sbjct: 460 SLIAQKFKVKISELMSWNKLSSSA-LQPGQTL 490



 Score = 52.4 bits (124), Expect = 4e-11
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 13/142 (9%)

Query: 388 LFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAK 447
           L VP S   +   AL+   +  + Q V   +YQ    +  G+SL  IA+Q+    Q L +
Sbjct: 304 LVVPVSNAPDFVVALA---QTPQEQRVQWARYQ----IKRGDSLSVIARQFGTTPQVLKQ 356

Query: 448 WNGMAPKDALRKGQKLVIWKDSKPT-SGVIRTVT----YKVRSGDTLSGIANKFKVKTAD 502
            N M   + L  G++LV+  + +   S  + + T    YKV+SGD+L  IA    +   D
Sbjct: 357 VNQMK-NNQLIAGKELVVPANGRTNASAQLASATPKQSYKVKSGDSLWKIAQAHGISVND 415

Query: 503 IVKWNDLNSTQYLKAGQQLKLY 524
           + KWN L S   ++ GQ L ++
Sbjct: 416 LKKWNSLGSKAIIRQGQLLTVW 437



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 349 YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFV 390
           Y+VK GD+LS IA K+      +   N+++S+ ++ G  L V
Sbjct: 451 YQVKRGDSLSLIAQKFKVKISELMSWNKLSSSALQPGQTLTV 492