Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., Slt family transglycosylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  183 bits (465), Expect = 9e-51
 Identities = 131/374 (35%), Positives = 191/374 (51%), Gaps = 40/374 (10%)

Query: 7   WVLALL----LVGCQSPQPVDTTTSDD----QAVNPPTQSATVKKKRKPQTTATLPAGET 58
           W + LL    L GCQ    V+T TS +     A   P Q   V K+    +   LP  E 
Sbjct: 21  WFVLLLTLTILAGCQ----VNTDTSGEPWETDAQPQPEQVPLVVKEATAPSEPALPEAEA 76

Query: 59  ESVEEERVALTPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFL---KNPGHLQAIA-SR 114
           ++ +            ++WQ+IA    + +P    V     +FL   +N G     A + 
Sbjct: 77  KAYQ------------NLWQKIADAQTIAVPSHSEVT----YFLGLNRNNGLFPINAPAA 120

Query: 115 AEPFLYLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQN 174
           AEP+LY I  ++E R +PLEL LLP++ES + P     G A GLWQ  + TG+ + L+ N
Sbjct: 121 AEPWLYDIISELEARDMPLELALLPLIESGYHPGVKGLGGA-GLWQLSAQTGRNHHLRVN 179

Query: 175 FWYDGRRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPID 234
             +DGR D   AT AALDYL  L + F+ DW  A+AAYN GEG++  AI+ N++ GK  D
Sbjct: 180 QSFDGRLDPIPATRAALDYLLYLYEMFNNDWLSAVAAYNMGEGKLKTAIERNRRKGKAED 239

Query: 235 FFSLDLPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARY 294
           F +L L +  +  + K +A   V+ + +    S P I N PVLA       + L+  A+ 
Sbjct: 240 FLALGLSRNQAPTLYKWLAALAVLRDPQTQSASFPPIANAPVLAREAVPNGVALSNIAQA 299

Query: 295 AGLTVKELQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENR----GKGIKVVRYK 350
            G++ KEL   NPA+       +G +Q+ +P  ++   N A+   R    GKG     Y+
Sbjct: 300 MGMSAKELSRLNPAFRDGIVPFSGKYQINLPESRLPALNAALVNLRPSTPGKG---GSYQ 356

Query: 351 VKSGDTLSTIADKY 364
           VKSGDTLS IA ++
Sbjct: 357 VKSGDTLSGIAKRH 370



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 480 TYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
           +Y+V+SGDTLSGIA +  ++   ++  N LN    +K GQQL+L
Sbjct: 354 SYQVKSGDTLSGIAKRHGMRLDKLLSLNGLNMKSIIKPGQQLRL 397



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 346 VVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVS 405
           + R  V +G  LS IA     +AK +   N    + I   S  +   ++ + +  AL+ +
Sbjct: 282 LAREAVPNGVALSNIAQAMGMSAKELSRLNPAFRDGIVPFSGKY-QINLPESRLPALNAA 340

Query: 406 N-RLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKL 463
              L  +     G YQ    V SG++L  IAK++ +    L   NG+  K  ++ GQ+L
Sbjct: 341 LVNLRPSTPGKGGSYQ----VKSGDTLSGIAKRHGMRLDKLLSLNGLNMKSIIKPGQQL 395