Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., putative peptidoglycan binding peptidase from Phaeobacter inhibens DSM 17395

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 409 AKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKD 468
           A    V  G   + H V  GE+ +T+++ Y VP ++LA+WNG+    A+R+GQ L+I   
Sbjct: 167 ASKPQVQSGPEPVRHKVKRGETAYTVSRLYQVPVKALAEWNGLGSDFAIREGQFLLIPLK 226

Query: 469 SKP 471
            +P
Sbjct: 227 DRP 229



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 343 GIKVVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASN-QIRVGSYLFVPTSVKDEKA 399
           G + VR+KVK G+T  T++  Y    K + E N + S+  IR G +L +P  +KD  A
Sbjct: 175 GPEPVRHKVKRGETAYTVSRLYQVPVKALAEWNGLGSDFAIREGQFLLIP--LKDRPA 230



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 48/142 (33%)

Query: 428 GESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPT----SGVI------- 476
           G++L  +A +  +P   LA++NGM   D LR+G+ + + + +  T    SG +       
Sbjct: 80  GDTLNDVADRIGLPASELARFNGMKTDDPLRQGEIIALPRRAPGTASNSSGGVDIASLAG 139

Query: 477 -------------------------------------RTVTYKVRSGDTLSGIANKFKVK 499
                                                  V +KV+ G+T   ++  ++V 
Sbjct: 140 DAIDRAPATTPSAASTVNTTPLAPQPSASKPQVQSGPEPVRHKVKRGETAYTVSRLYQVP 199

Query: 500 TADIVKWNDLNSTQYLKAGQQL 521
              + +WN L S   ++ GQ L
Sbjct: 200 VKALAEWNGLGSDFAIREGQFL 221