Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., lytic transglycosylase, catalytic (RefSeq) from Shewanella loihica PV-4

 Score =  494 bits (1271), Expect = e-144
 Identities = 261/519 (50%), Positives = 340/519 (65%), Gaps = 25/519 (4%)

Query: 12  LLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETESVEEERVALTPQ 71
           LL GCQ      T T  + A    T +  V +   PQ  A         VE E + +T  
Sbjct: 14  LLTGCQ------TFTQPEPAAPAITTAPVVVE---PQVIAP--------VEPEPIQIT-- 54

Query: 72  EQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQRGL 131
              DVWQRI +   L +P    V+  R W+LK+P HL  ++ RAEPF+YLI E++E+R L
Sbjct: 55  ---DVWQRIRLGLTLPVPDQKLVNQYRNWYLKHPQHLARVSERAEPFMYLIVEEIEKRNL 111

Query: 132 PLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDAAL 191
           P+EL LLPIVES+FDPFAYSHG+A+GLWQF +   K +GL+ N+WYDGRRDV AAT AAL
Sbjct: 112 PIELALLPIVESAFDPFAYSHGAASGLWQFTAPMAKHFGLEMNWWYDGRRDVPAATVAAL 171

Query: 192 DYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVPKL 251
           D +  L Q    +W +AIAAYN+GEGRV  A+K N+  G   DF++LDLP+ET  YVP+L
Sbjct: 172 DMMEYLYQKTHNNWLYAIAAYNTGEGRVLNAVKRNEAKGLATDFWALDLPRETERYVPQL 231

Query: 252 IALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAYNQ 311
           +ALADVIAN + YGIS+  I N P L  V+   Q+DLA+AA  AG+ + EL S NP +NQ
Sbjct: 232 LALADVIANADDYGISLYPIPNEPQLKVVEVGSQIDLALAADMAGMKLNELHSLNPGFNQ 291

Query: 312 WATAPNGPHQLLIPVEKVERFNLAM-EENRGKGIKVVRYKVKSGDTLSTIADKYNTTAKV 370
           WATAP GPH+L++P++  E F   +   ++ + +K  RYK+KSGD+L  IA ++NTT   
Sbjct: 292 WATAPEGPHRLVVPLDHAELFETKLAASDQDQRLKWQRYKIKSGDSLGLIAKRFNTTPSA 351

Query: 371 IKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGES 430
           ++  N I +N+I  G +L +P S KD   Y LS   RL K QS   G Y+L++ V SG+S
Sbjct: 352 LRAVNDIKNNRIIAGKHLLIPVSSKDPAKYLLSAEQRLQKRQSGGSG-YKLSYKVKSGDS 410

Query: 431 LWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTLS 490
           LW IAKQ+ V    LAKWNGMAPKD L  GQKLVIW+    +  V RTV Y VRSGD+L+
Sbjct: 411 LWLIAKQHKVSVAKLAKWNGMAPKDPLSIGQKLVIWQQG-DSKAVTRTVNYTVRSGDSLA 469

Query: 491 GIANKFKVKTADIVKWNDLNSTQYLKAGQQLKLYVDVTK 529
            IA KF V  + +VKWN L++ +YL+ GQ+L LYVDVTK
Sbjct: 470 KIATKFNVSVSQLVKWNSLSTKKYLQPGQKLTLYVDVTK 508