Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., Lytic transglycosylase catalytic (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  197 bits (501), Expect = 1e-54
 Identities = 172/612 (28%), Positives = 260/612 (42%), Gaps = 118/612 (19%)

Query: 9   LALLLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETESVEEERVAL 68
           +ALL  GC    P         A   P  S       +P+    LP    +    + V L
Sbjct: 26  VALLAAGCA---PKKNLPPIQPAEACPVPSGATATAAEPEEVVELPIPPAD----DGVPL 78

Query: 69  TPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFL-------KNPGHLQAIASRAEPFLYL 121
           TPQE    W  +    +L   K+ S +A+R+  L       +  G  +    R++ +L  
Sbjct: 79  TPQE----WAALNSTGELD--KNLSPEARRDVELHFKYFTHRARGTFERYLKRSQNYLPH 132

Query: 122 ITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRR 181
           I E   Q+G+P E+  L IVES F+P A S   A G+WQF+  TG RYGL  ++W D RR
Sbjct: 133 IREVFRQQGIPEEIAYLAIVESGFNPNAVSPAGAVGVWQFMPYTGMRYGLSYSWWMDERR 192

Query: 182 DVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSL--- 238
           D   +  AA DYL  L   F GDW+ A+AAYN+GEG+++RA++     G    FF L   
Sbjct: 193 DPYKSARAAADYLQKLYGDF-GDWHLAMAAYNAGEGKISRALEGTGAEG----FFDLRAK 247

Query: 239 --------DLPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAI 290
                    L  ET  YVP+ IA+A ++ N E  G   P     P L  +  K   DL  
Sbjct: 248 NHMLDGKAQLKDETRQYVPRFIAVAKIMRNLESLGFQAPDYSCPPKLEQLRVKPGTDLMA 307

Query: 291 AARYAGLTVKELQSFNPAYNQWATAPNGPHQLLI---PVEKVERFNLAMEENRGKGIKVV 347
            A+  G    +  + NPA+ ++ + P+    + +    +E    F    ++    G +V 
Sbjct: 308 LAQAMGQNWSDFSANNPAFRRYISPPDAHTTVYVHPMHLEAATAFLAKPQQRSYAGWRV- 366

Query: 348 RYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVP---------------- 391
            YKV+ GDTL  I  +      V+K  N+ AS +++VG  L +P                
Sbjct: 367 -YKVRQGDTLDRIGKRCGVPVSVLKRVNK-ASGKLQVGQELMIPGGGDATDFTAQAETPA 424

Query: 392 ----TSVKDEKAYA-----LSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPY 442
                S K  KA A        S+R +  ++    + + T+ V  G++L+ IAK      
Sbjct: 425 SKSAASAKGGKAVADKQDKSDKSDRSSSVRTRDIAERRATYIVKQGDTLYGIAKAQGSSV 484

Query: 443 QSLAKWNGMAPKDALRKGQKLVIWKDSKPTSGVIR------------------------- 477
           ++L K NG++   AL+ GQKL I       + + R                         
Sbjct: 485 ETLQKANGLS-GIALQLGQKLYIPDAGAEATAIARQEAEAANKAIVASASRGGAERAATP 543

Query: 478 -------------------------TVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNST 512
                                     + YKV+ GDT+  IA KF V   ++++WN+L   
Sbjct: 544 VAVATASKSAGAKPAASQAAAPSGRAIVYKVQEGDTMWAIARKFNVPPKELLRWNNLERD 603

Query: 513 QYLKAGQQLKLY 524
             LK G Q+ ++
Sbjct: 604 AQLKPGDQITVH 615



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 481 YKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL--YVDVTKFSA 532
           YKVR GDTL  I  +  V  + + + N   ++  L+ GQ+L +    D T F+A
Sbjct: 367 YKVRQGDTLDRIGKRCGVPVSVLKRVN--KASGKLQVGQELMIPGGGDATDFTA 418