Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  261 bits (666), Expect = 5e-74
 Identities = 158/442 (35%), Positives = 233/442 (52%), Gaps = 32/442 (7%)

Query: 47  PQTTATLPAGETESVEEERVALTPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPG 106
           P+      + E +SVE E +    +   DVW++I     + +  D  V  QR +F     
Sbjct: 43  PEAEDHSESAEPQSVEAEVI---DERYADVWEKIQHARTIDVHDDAEVRKQRNFFDDKQK 99

Query: 107 HLQAIASRAEPFLYLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTG 166
            +  +  RAEPFLY I  ++E R +PLEL LLPIVES ++P A ++G A GLWQ I +TG
Sbjct: 100 FMTQVTQRAEPFLYYIVSQLEARNMPLELALLPIVESGYNPLAQANGPA-GLWQMIPATG 158

Query: 167 KRYGLKQNFWYDGRRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKAN 226
           + +GL  N  YDGR+D  A+TDA LDYL  L      DW +A+A YNSGE  +  AI  N
Sbjct: 159 RNFGLTINSAYDGRKDALASTDAVLDYLQHLYNTLGNDWINAVAGYNSGELVIKAAIDRN 218

Query: 227 KKAGKPIDFFSLDLPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQL 286
           K  GKP DF+SL++P      VPK +A   +I     Y + +  I NRP L  +     +
Sbjct: 219 KAKGKPTDFWSLNIPARQVQTVPKWLAFIQIIREPSHYNLKVMPIANRPFLERLPAPNGV 278

Query: 287 DLAIAARYAGLTVKELQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKV 346
           +++  A  AGLT  E +++NP Y Q      G +Q+ +P+E +  +    +EN+ K    
Sbjct: 279 EISQIANAAGLTKAEFKTYNPGYRQSVIPSKGKYQIALPIENIGHY----QENQHKLYAQ 334

Query: 347 VRYK-----VKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGS--YLFVPTSVKDE-- 397
            RY      VKSGD+L TIA K++ + K +K+AN + S+++++G    L  P +  D   
Sbjct: 335 KRYDSQTYIVKSGDSLGTIAAKFDLSVKELKQANNLTSDRLKIGQELTLLTPMAANDNEP 394

Query: 398 --------------KAYALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQ 443
                         KA A S     +K+   P  + + T+ V SG+SL  IA++  V   
Sbjct: 395 EPVKTKANTDKSSTKANASSTKATSSKSTDKPVAKAK-TYKVKSGDSLDKIARKSKVKLA 453

Query: 444 SLAKWNGMAPKDALRKGQKLVI 465
            L KWN +  K  ++ GQ+L I
Sbjct: 454 DLMKWNQLNAKSIIKPGQELKI 475



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 480 TYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKL 523
           TY V+SGD+L  IA KF +   ++ + N+L S + LK GQ+L L
Sbjct: 341 TYIVKSGDSLGTIAAKFDLSVKELKQANNLTSDR-LKIGQELTL 383