Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  439 bits (1129), Expect = e-127
 Identities = 230/523 (43%), Positives = 326/523 (62%), Gaps = 23/523 (4%)

Query: 12  LLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKRKPQTTATLPAGETESVEEERVALTPQ 71
           LL GCQ       T  + Q   P  Q+ T +        AT P         E   +T  
Sbjct: 14  LLTGCQ-------TLDNHQVTKPEAQTVTTENTVPQYYLATEP---------ESAQVT-- 55

Query: 72  EQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQRGL 131
              DVW+RI    +L +P    V+  R+W++ NP HL+ I+ RA P++YLI E++E+R L
Sbjct: 56  ---DVWERIRQGMQLPVPDKKLVNYYRDWYINNPKHLEVISERAAPYMYLIVEELEKRHL 112

Query: 132 PLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDAAL 191
           P+E+ LLPI+ES+FDP A S  +A+GLWQF +     +GL+ N+WYDGRRDV A+T AAL
Sbjct: 113 PIEIALLPIIESAFDPSASSASAASGLWQFTTPMASHFGLEMNWWYDGRRDVPASTTAAL 172

Query: 192 DYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVPKL 251
           D L  L    + +W +AIAAYN+GE +V  AIK N+  G   DF+SLDLPKET  YVP+L
Sbjct: 173 DMLEYLYNKTNNNWLYAIAAYNTGESKVLNAIKRNEDKGLKTDFWSLDLPKETKRYVPQL 232

Query: 252 IALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAYNQ 311
           +ALA+VI + ++YGI++  I N P +  VD   Q+DLA+AA  A +T  EL   NP YN+
Sbjct: 233 LALAEVIKHADEYGITLAPINNSPSIEVVDIDSQIDLAMAAGLANMTTTELAKLNPGYNR 292

Query: 312 WATAPNGPHQLLIPVEKVERFNLAMEENRGKG-IKVVRYKVKSGDTLSTIADKYNTTAKV 370
           WAT+P GPH L++P++K E F  A+ E   +  +  +RY +KSGD++ +IA K++TT   
Sbjct: 293 WATSPLGPHTLVLPIDKSEEFKKALAETESEARVSWLRYTIKSGDSIGSIAQKHHTTVNA 352

Query: 371 IKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGES 430
           I+ AN + SN I  G +L +P S  D++ YALS S +L K  +      +LT+ V SG+S
Sbjct: 353 IRAANGMKSNNIVAGRHLIIPVSADDKQLYALSTSQKLPKKAAGATSGNKLTYQVKSGDS 412

Query: 431 LWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKL-VIWKDSKPTSGVIRTVTYKVRSGDTL 489
           LW IA+ +NV  + L  WN ++    L+ GQKL ++    K  S  IRTV+YKV+SGD+L
Sbjct: 413 LWQIAQAHNVSVKQLTAWNHLSKDSKLQTGQKLTIVAPQEKLDSEHIRTVSYKVKSGDSL 472

Query: 490 SGIANKFKVKTADIVKWNDLNSTQYLKAGQQLKLYVDVTKFSA 532
           + IA+KFKV  A++++WN L  +QY+  GQ LKL VD +  +A
Sbjct: 473 AQIASKFKVTVAELLEWNSLTPSQYILPGQVLKLVVDESNLNA 515