Pairwise Alignments

Query, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., MltD domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  277 bits (708), Expect = 7e-79
 Identities = 177/496 (35%), Positives = 255/496 (51%), Gaps = 61/496 (12%)

Query: 39  ATVKKKRKP-QTTATLP-----AGETESVEEERVALTPQEQDDVWQRIAMQFKLGIPKDP 92
           AT   +  P +  ATLP     + ET   +     +  +   DVW++I     + +  D 
Sbjct: 27  ATTSAQTSPTEYAATLPDAQGNSEETAQPQHFETEVIDERYADVWEKIQHARTIDVHDDA 86

Query: 93  SVDAQREWFLKNPGHLQAIASRAEPFLYLITEKVEQRGLPLELVLLPIVESSFDPFAYSH 152
            V  QR +F      +  +  RAEPFLY I  ++E R +PLEL LLPIVES ++P A ++
Sbjct: 87  EVRKQRNFFDDKQKFMTQVTQRAEPFLYYIVSQLEARNMPLELALLPIVESGYNPLAQAN 146

Query: 153 GSAAGLWQFISSTGKRYGLKQNFWYDGRRDVAAATDAALDYLTVLNQHFDGDWYHAIAAY 212
           G A GLWQ I +TG+ +GL  N  YDGR+D  A+TDA LDYL  L+     DW +A+A Y
Sbjct: 147 GPA-GLWQMIPATGRNFGLTINSAYDGRKDALASTDAVLDYLQHLHDTLGNDWINAVAGY 205

Query: 213 NSGEGRVARAIKANKKAGKPIDFFSLDLPKETSGYVPKLIALADVIANQEKYGISIPAIE 272
           NSGE  +  AI  NK  GKP DF+SL++P      VPK +A   +I     Y + +  I 
Sbjct: 206 NSGELVIKAAIDRNKAKGKPTDFWSLNIPARQVQTVPKWLAFIQIIRAPSHYNLKVMPIA 265

Query: 273 NRPVLATVDPKEQLDLAIAARYAGLTVKELQSFNPAYNQWATAPNGPHQLLIPVEKVERF 332
           NRP L  +     ++L+  A  AGLT  E +++NP Y Q      G +Q+ +P+E + ++
Sbjct: 266 NRPFLERLPAPNGVELSQIANAAGLTKAEFKTYNPGYRQSVIPSKGKYQIALPIENIGQY 325

Query: 333 NLAMEENRGKGIKVVRYK-----VKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSY 387
               +EN+ +     RY      VKSGD+L TIA K++ + K +K+AN + S++I++G  
Sbjct: 326 ----QENQHQLSAQTRYDSQSYIVKSGDSLGTIAAKFDISVKELKQANNLNSDRIKIGQE 381

Query: 388 LFVPTSVKDEKAYALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAK 447
           L + T +        S  N   +T                             P QS A+
Sbjct: 382 LTLLTPMS-------SEDNTSTET-----------------------------PKQSKAQ 405

Query: 448 WNGMAPKDALRKGQKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWN 507
               A K       K       KPT+   +  TYKV+SGD+L  IA K KVK AD++KWN
Sbjct: 406 TTSQAAK------AKTSSKTADKPTA---KASTYKVKSGDSLDKIARKNKVKLADLMKWN 456

Query: 508 DLNSTQYLKAGQQLKL 523
            LN+   +K+GQ+LKL
Sbjct: 457 QLNAKSIIKSGQELKL 472