Pairwise Alignments

Query, 156 a.a., ribonuclease HI from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., RNase HI from Synechococcus elongatus PCC 7942

 Score =  129 bits (325), Expect = 3e-35
 Identities = 64/142 (45%), Positives = 93/142 (65%), Gaps = 5/142 (3%)

Query: 5   VEIFTDGSCLGNPGPGGYGIVMRYKQ-VEKTLARGYRLTTNNRMEMLAAVMALQALKEPC 63
           + ++TDG+C GNPGPGG+G+ +++     + L      TTNNRME+ AA+ AL+  ++  
Sbjct: 6   LRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALEFWRDHS 65

Query: 64  R---VILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALDKETARHQVEWRW 120
               V L TDS+YV +GITQW+  W+ +GWKTA  KPV N DLW  LD +     V+W++
Sbjct: 66  DQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLNQDLWMHLD-DLNSPAVQWQY 124

Query: 121 VKGHAGHRENEMCDELARQAAE 142
           V+GH+G   NE CD++AR  A+
Sbjct: 125 VRGHSGDPGNERCDQIARSFAQ 146