Pairwise Alignments

Query, 156 a.a., ribonuclease HI from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., ribonuclease H (RefSeq) from Shewanella loihica PV-4

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 2   NKQVEIFTDGSCLGNPGPGGYGIVMRYKQVEKTLARGYRLT--TNNRMEM----LAAVMA 55
           +  ++I+TDG C  NPG  G G+ +  K     L  G      TNN  E+     A +MA
Sbjct: 83  DSDIDIYTDGGCEPNPGEAGSGLALYKKGELAELWYGLYNPKGTNNTAELNALHQALLMA 142

Query: 56  LQALKEPCRVILTTDSQYVRQGITQWIHNWKLRGWKTADKKPVKNADLWQALD-KETARH 114
            Q L++  RV + +DSQY  + I+ W + WK  GW+    +    + + +A +  ++ + 
Sbjct: 143 RQYLEQGLRVHIHSDSQYAIKCISLWAYGWKANGWRRKTGEIANLSVIQEAHELYDSLKD 202

Query: 115 QVEWRWVKGHAGHRENEMCDELARQAAEN 143
           +++   V  H G   NE+ D ++    E+
Sbjct: 203 KLKLSHVAAHVGIEGNELADRMSIYTIES 231