Pairwise Alignments

Query, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  266 bits (679), Expect = 4e-76
 Identities = 136/246 (55%), Positives = 175/246 (71%), Gaps = 5/246 (2%)

Query: 1   MNTSNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD 60
           MN  +NAE Q  ++LDTETTGMN+  G  Y GHRIIEIG VE++NR+LTGR FH Y+ P 
Sbjct: 1   MNIISNAERQ--IILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINPG 58

Query: 61  RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLG 120
           + I  EAI VHGIT++ +  +P + ++   F+DFI+GAELVAHNA FD+ F+++EF+ L 
Sbjct: 59  QAIDEEAIAVHGITNDRVAGEPRFHEIVGGFLDFIRGAELVAHNASFDMSFINHEFSMLV 118

Query: 121 GAIGKTSDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVY 180
               K  D C V D+LA+AK + PG++NNLD LC+RYGIDN+ RT HGALLDAEILADVY
Sbjct: 119 PQGPKVEDICTVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVY 178

Query: 181 LLMTGGQTSLQFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAKS 240
           L+MTGGQT     +   + G      + R  S R +LKV+ A+ADEL  H+ RLD+V KS
Sbjct: 179 LVMTGGQTKFNLHA---DEGSQEQGGIIRLDSNRPSLKVVRATADELGNHEKRLDLVGKS 235

Query: 241 GTCLWR 246
           G CLWR
Sbjct: 236 GKCLWR 241