Pairwise Alignments

Query, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., DNA polymerase III, epsilon subunit (RefSeq) from Shewanella loihica PV-4

 Score =  284 bits (726), Expect = 1e-81
 Identities = 146/246 (59%), Positives = 182/246 (73%), Gaps = 5/246 (2%)

Query: 1   MNTSNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD 60
           MN  +NA+ Q  V+LDTETTGMN+  G  Y GHRIIEIG VE+INRKLTGRHFH Y+ P 
Sbjct: 1   MNIISNAKRQ--VILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINPM 58

Query: 61  RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLG 120
           + I  EAI VHGIT+EF+ DKP +  +   F++FI GAE+VAHNA FDV FMD+EF+ L 
Sbjct: 59  QAIDEEAITVHGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSLLT 118

Query: 121 GAIGKTSDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVY 180
               KT+D C+V D+L +AK + PG++NNLD LC+RYGIDNS R LHGALLDAEILADVY
Sbjct: 119 PRGPKTTDICQVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVY 178

Query: 181 LLMTGGQTSLQFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAKS 240
           L+MTGGQT  + S+  +  G+ S   + R  + R +LKV+ ASADEL  H+ RLD+V KS
Sbjct: 179 LIMTGGQTKFELSN--EKPGQESG-GIIRLANNRPSLKVIGASADELNMHEQRLDLVEKS 235

Query: 241 GTCLWR 246
           G C+WR
Sbjct: 236 GQCIWR 241