Pairwise Alignments

Query, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., DNA polymerase III, epsilon subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  272 bits (696), Expect = 4e-78
 Identities = 143/248 (57%), Positives = 176/248 (70%), Gaps = 9/248 (3%)

Query: 1   MNTSNNAEYQRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPD 60
           MN  +NA  Q  V+LDTETTGMN+  G  Y GHRIIEIG VE+INR+LTGR++H Y+ P 
Sbjct: 1   MNIISNASRQ--VILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPG 58

Query: 61  RDIQLEAIEVHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLG 120
           + I  EAI VHGITDE + ++P +  + +EF+DFI GAE+VAHNA FDV FMD+EF+ L 
Sbjct: 59  QAIDPEAIAVHGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQ 118

Query: 121 GAIGKTSDFCKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVY 180
               KT D C++ D+L +AK + PG++NNLD LC+RYGIDNS R  HGALLDAEILADVY
Sbjct: 119 PLGPKTRDICEILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVY 178

Query: 181 LLMTGGQTSLQFSS--VTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVA 238
           L MTGGQT    S+  V Q  G      ++R       LKV+ ASADEL  H+ RLD+VA
Sbjct: 179 LSMTGGQTKFNLSNEEVGQEGG-----GIQRFDPTSLNLKVICASADELVMHEKRLDLVA 233

Query: 239 KSGTCLWR 246
           KSG CLWR
Sbjct: 234 KSGKCLWR 241