Pairwise Alignments

Query, 419 a.a., TIGR03503 family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (384), Expect = 2e-41
 Identities = 121/418 (28%), Positives = 191/418 (45%), Gaps = 49/418 (11%)

Query: 26  SLLDNRFRVDPTITQITFVIYREKDSQPVVLVRPDGSKYYQWRNPENVRWYQESSMDIIS 85
           S L NRFRVD  ++ +T +I RE  S PVV+V PDGSK+Y  R+PE V+W    + DII 
Sbjct: 75  SELKNRFRVDHMVSSMTLLIQREYGSAPVVIVLPDGSKWYANRHPETVKWVDGMTGDIIY 134

Query: 86  IENPMPGPWQAIGKVTPKNNIKLISNLQLTTDVFPSRVFQGEEFKFTARLTSDGKPLLL- 144
           IE+P PGPWQ +GK+   + IK +S L++     P  +FQGEE K  A+L  D + + + 
Sbjct: 135 IESPQPGPWQLVGKIVSGSQIKRVSKLEIEVQHLPQPLFQGEEIKVVAQLMGDAERVRMP 194

Query: 145 -RDFLDRVNLKVTFTKFVENEDSLAKEARPIPEVLGEFADDGTLLDEKPGDGVFTVALKM 203
             D+L         T FV    +  +       ++G + D+G   DE+P DG+FT  + +
Sbjct: 195 GMDYLVEWT-----THFVSKHRAGDENFAAGDIIVGSYKDNGEKFDERPDDGMFTSDINL 249

Query: 204 AIEPGKYRVRITSGNGVFLRAQEQEVLVYPTPISTTFIQSRLTGAPHQVLFTGEQGMIEP 263
               G+Y   + + N VF R       + P P++   I       P   L    + M+  
Sbjct: 250 KQPWGEYDFVVLARNNVFERQVSFPFTLSPRPVNAEVI------TPEDPLTGQWKIMLHA 303

Query: 264 GSLVAHIRHRHPYQDDYIAQA-------QSGKESLTAKLTIPYDGQFGNYSWDGKVWATE 316
            S V  +   H +  + +  A         G      +L +P   +FG+Y   G V AT 
Sbjct: 304 DSSVLQLAETH-FSFELVGPAGLQLPLVLHGLSQSDVELDLPPVTEFGSYRIKGSV-ATT 361

Query: 317 LASQRELYFPIGDQTYSVV-------DELNIAEVRRIQEEEEALRLKQEQELLIIQMREE 369
             S RE+   + +  +++V        E  +A V   +  EE    KQ+    II +   
Sbjct: 362 TVSGREIVLDLPELFFNLVQPPEPPPSEEELAAVAAQKAAEEEALAKQDAIFWIITV--- 418

Query: 370 QRSRNMMYIIVGNIVVLI----------LALAVWFVLRKIKMKKAAVP---EMQLNMP 414
               N + +++G + +++          LA A   ++   +  KA  P   E+ L MP
Sbjct: 419 ----NAVLLLLGIVGLIVWRKRQSLAQALAAAEQRIMDDAEQNKAEAPSLDEIDLTMP 472