Pairwise Alignments

Query, 512 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  116 bits (291), Expect = 2e-30
 Identities = 79/300 (26%), Positives = 148/300 (49%), Gaps = 13/300 (4%)

Query: 42  RKKFSWILVTLIIFGFFVTSLVSYKVAHDTLEEQINKDSLPLTSDNIYSEIQQDLIRPIF 101
           R+K     +  ++   F+ SL +   + + + +      LP     + ++I   L+ PI 
Sbjct: 7   RRKVVLATLASVVLSIFLISLYAMSNSREIILDSTLNRELPAVLGEVANDIDAQLLMPIT 66

Query: 102 ISSLMAQDTFVREWTLAGEQDPER--IIRYLREIQRQYQTISSFYISDRTGHYYHYTGIL 159
           +S +MA +   +     GE +  +  +I  L  I++++  I++F +S+ TG Y+ + G+ 
Sbjct: 67  VSKVMANNLEYQAMIRQGEPEASQATLIASLANIRQRFGAITAFLVSNTTGRYFTHEGLF 126

Query: 160 KQVSESNPNDAWFYRVKNSAPDKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGV 219
           K VS S+  DAWFYR   S   K+++++ID+D  N Q   +F+NY V   E +  GV GV
Sbjct: 127 KTVSPSDDRDAWFYRFLGSG--KDYDLSIDVDDLN-QTPTLFINYLV-QIEGKPSGVAGV 182

Query: 220 GLSSDAVSALVEKYQKRYNRHIYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTS 279
           GLS ++++  +++Y+      +Y  +  G++ +HG       Q+    G+K     +   
Sbjct: 183 GLSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSAL-GIKDPQALLSQQ 241

Query: 280 PSVGASYYADGQKVYLNSRWVDEFQWYIIVE-QKDE----FNHDIWFKATLGNLAISAFV 334
               + Y  +G    + SR++    WY+I E  +DE     N   W  A +G L ++A +
Sbjct: 242 TFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQLALMG-LILAAII 300