Pairwise Alignments

Query, 512 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  506 bits (1304), Expect = e-148
 Identities = 250/474 (52%), Positives = 336/474 (70%), Gaps = 5/474 (1%)

Query: 42  RKKFSWILVTLIIFGFFVTSLVSYKVAHDTLEEQINKDSLPLTSDNIYSEIQQDLIRPIF 101
           +KKF W+L  L++  F VTS +SYKVAHD+L +QI  ++LPLTSDNIYSEIQQDL+RPIF
Sbjct: 9   KKKFIWLLSVLLLVAFLVTSGISYKVAHDSLSQQIESNTLPLTSDNIYSEIQQDLLRPIF 68

Query: 102 ISSLMAQDTFVREWTLAGEQDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILKQ 161
           ISSLMAQDTFVR+WTL  EQ+PE++IRYL+EIQ +Y T++SF+IS+++ +YYH +G+LK+
Sbjct: 69  ISSLMAQDTFVRDWTLNHEQEPEKLIRYLKEIQDKYDTVTSFFISEQSRNYYHSSGVLKK 128

Query: 162 VSESNPNDAWFYRVKNSAPDKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGL 221
           + +  PNDAW++RV++    +++E+NID DTA+  +T VFVNYKVFDFE++F+GV GVGL
Sbjct: 129 IQDVEPNDAWYFRVRSLPESEHYEINIDADTADRTKTTVFVNYKVFDFESKFIGVTGVGL 188

Query: 222 SSDAVSALVEKYQKRYNRHIYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPS 281
           + + V AL+E YQKRYNR ++F +  G VTLHG  + G + +Q   GL+ LAT+ILTSPS
Sbjct: 189 AVEKVKALIELYQKRYNRRVFFTDRQGNVTLHGDEYDGANSLQASTGLEQLATRILTSPS 248

Query: 282 VGASYYADGQKVYLNSRWVDEFQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGL 341
              SY  +G+ VYLNSR V EF+WY++VEQ+D            GNLA+S  V +G+L +
Sbjct: 249 AAFSYQRNGKTVYLNSRLVPEFKWYLVVEQEDAPQEQELLNTFWGNLALSLVVTIGILFI 308

Query: 342 AQMSFRGYQKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQ 401
           + M+   YQ++LE MA  DKLTGA NRQVFEE    A+  A      +S+ +ID+DHFK+
Sbjct: 309 SNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISILLIDIDHFKK 368

Query: 402 VNDNYGHPAGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIR- 460
           VND+YGH  GDLVL+ V  L +  +     LCRWGGEEF+VLLP M    A +  E  R 
Sbjct: 369 VNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRAAELAERFRD 428

Query: 461 ----AEIAMHASQPQVTVSIGVVQYQQNESLLHLFNRADQAMYTAKSEGRNKVV 510
                E+ ++     +TVSIGV +YQ+ E    L  RAD A+Y AK  GRN+VV
Sbjct: 429 SISQRELKVNGVHIAITVSIGVAEYQKLEPAEDLIKRADLALYQAKEAGRNQVV 482